Hi Maarten,

Yes, all of my data is in standard space and the registration worked okay as far as I can tell.

Thank you for the suggestion of the mask, I will consider using it a bit later on.

I appreciate that you took the time to respond. :)

Cheers,

Noelle Dalin

From: "[log in to unmask]" <[log in to unmask]> on behalf of Maarten Mennes <[log in to unmask]>
Reply-To: "[log in to unmask]" <[log in to unmask]>
Date: Monday, October 24, 2016 at 12:11 AM
To: "[log in to unmask]" <[log in to unmask]>
Subject: Re: [FSL] Wonky Dual Regression Output

Dear Noelle,

Are all of the filtered_func_data in standard space? Did you look at each of them to see whether the registration worked properly?

those would be the typical steps involved in investigating your question. Your dual_regression command looks fine, you could add a mask of you standard pediatric brain if you wanted to.

hth
Maarten


On Thu, Oct 20, 2016 at 7:00 PM, Noelle Dalin <[log in to unmask]> wrote:
Hello all,

I am analyzing functional connectivity data for 20 children. We are finding that the contrasts show activation outside of the standard brain after dual regression. An issue with registration, possibly?

This is my command for dual regression:

dual_regression GrouplevelnoFRA.gica/groupmelodic.ica/melodic_IC.nii.gz 1 GLM_20.mat GLM_20.con 5000 20_5000.dr 001A_filtered_func_data.nii.gz 003A_filtered_func_data.nii.gz 004A_filtered_func_data.nii.gz 005A_filtered_func_data.nii.gz 007A_filtered_func_data.nii.gz 019A_filtered_func_data.nii.gz 021A_filtered_func_data.nii.gz 022A_filtered_func_data.nii.gz 037A_filtered_func_data.nii.gz 041A_filtered_func_data.nii.gz 008A_filtered_func_data.nii.gz 011A_filtered_func_data.nii.gz 015A_filtered_func_data.nii.gz 027A_filtered_func_data.nii.gz 029A_filtered_func_data.nii.gz 035A_filtered_func_data.nii.gz 039A_filtered_func_data.nii.gz 044A_filtered_func_data.nii.gz 045A_filtered_func_data.nii.gz 048A_filtered_func_data.nii.gz


We are using a standard pediatric brain as the standard that is not from FSL and are performing dual regression at a 4mm voxel so that it runs faster.


Let me know if you have any tips or suggestions.


Thank you for your time and expertise.


Cheers,


Noelle Dalin






--
Maarten Mennes, Ph.D.
Senior Researcher
Donders Institute for Brain, Cognition and Behaviour
Radboud University Nijmegen
Nijmegen
The Netherlands