I'm not sure about your version of eddy but I've used the 5.0.9.
Also, the function name is eddy_openmo not eddy.First make sure you have the latest patch for eddy. Then add --repol option and don't forget to use mutualinfo as cost function.
Mahmoud
On Fri, Oct 14, 2016 at 5:09 PM, Thais Minett <[log in to unmask]> wrote:
Not really,
My command was: eddy --imain=xxx_DTI.nii --mask=xxx_nodif_brain_mask.nii --index=index.txt --acqp=acqp.txt --bvecs=xxx_DTI.bvecs --bvals= xxx_DTI.bvals --fwhm=0 --flm=quadratic --out=xxx_data
Regards,
Thais Minett