Hi - This error occurs in voxels where the b=0 is very small (~1e-6). If you change your brain mask to only contain b=0 values above some threshold, you should be able to run DTIFIT fine.
For example:fslroi data nodif 0 1fslmaths nodif -thr 10 -bin -mas nodif_brain_mask.nii newmask
Hopefully we should be able to fix this in future releases.
Cheers,Saad
On 10 Oct 2016, at 14:18, Ana Maria Escorza <[log in to unmask]> wrote:
I did
2016-10-10 14:09 GMT+02:00 Saad Jbabdi <[log in to unmask]>:
Hi -thanks. could you upload your data using this link: https://oxfile.ox.ac.uk/oxfile/work/extBox?id=38233523 EDFBBDF4A7 so that I can try to replicate your error.
Cheers,Saad
On 10 Oct 2016, at 11:51, Ana Maria Escorza <[log in to unmask]> wrote:
<20111214_130020WIPDTIL64Db150Of course, thanks.
2016-10-10 12:48 GMT+02:00 Saad Jbabdi <[log in to unmask]>:
Hi - could you attach your bvals/bvecs file?
Cheers,
Saad
> On 10 Oct 2016, at 10:33, Ana E. <[log in to unmask]> wrote:
>
> Hello,
>
> When I use dtifit without the option --wls, I don't obtain error.
>
> But when I use the same command but add the --wls option, I obtain the following error:
>
> Terminate called after throwing an instance of 'NEWMAT::SingularException'
>
>
> Could someone help me? any ideas?
0SENSEMOLINAPORRASEMILIOs401a1 <correct.eddy_004.bval> rotated_bvecs>