Dear FSL users,

 

Using FLIRT, it is possible to calculate the cost function value with the command:

flirt -in inpimage -ref refimage -schedule $FSLDIR/etc/flirtsch/measurecost1.sch -init inp2ref.mat

 

Is there a similar way to do this for warp fields calculated with FNIRT?

 

Thanks in advance.

 

Joep