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Hi Isobel, It seems like there is something already in the default install location (/usr/local/fsl) - maybe a partial (failed) installation. Could you check the contents of /usr/loca/ (with "ls -l") ? If there is already an FSL installation in /usr/local/fsl, remove it and try installing again. Cheers, Paul On 4 October 2016 at 10:45, Isobel French <[log in to unmask]> wrote: > Hi Paul, > > I did what you suggested and this is what I got: > > Downloading FSL version 5.0.9 (this may take some time) > Checking download... > [OK] Download is good. > Password: > Password: > Installing FSL software... > [FAILED] "The contents of /usr/local doesn't look like an FSL installtion > - will not install here, aborting install" ; > [neuros-iMac-2:~/Downloads] neuro% > > What does this mean? > > > > On Fri, Sep 30, 2016 at 7:04 PM, paul mccarthy <[log in to unmask]> > wrote: > >> Hi Isobel, >> >> As a guess, it looks like one of the questions asked by the >> fslinstaller.py script was given an incorrect answer (e.g. 'yes' where >> there should have been a directory, or no answer [i.e. just press enter]). >> >> I would recommend that you try to run the installer script again. >> >> Cheers, >> >> Paul >> >> On 30 September 2016 at 04:26, Isobel French <[log in to unmask]> >> wrote: >> >>> Hi, >>> >>> After running the installer script I ran the command echo $FSLDIR and >>> got the following as attached. What should I do now? >>> >>> Tqvm. >>> >>> >>> [neuros-iMac-2:~] neuro% echo $FSLDIR >>> yes/fsl >>> [neuros-iMac-2:~] neuro% >>> [neuros-iMac-2:~] neuro% flirt -version >>> flirt: Command not found. >>> [neuros-iMac-2:~] neuro% >>> >> >> >