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Dear Michael, I used the motion corrected data to run FIX. I’m interested in how the motion parameters change after running FIX. so, then I would use my raw EPI data (before running mcflirt) as input and calculate the different values (FD, DVARS and RMS). e.g. fsl_motion_outliers –i raw_data_EPI.nii.gz –o FD –fd –s fd.txt and as a second step I would use the filtered_func_data_clean as input image and then run fsl_motion_outliers for the different values (FD,DVARS,RMS). e.g. fsl_motion_outliers –i filtered_func_data_clean.nii.gz–o FD –fd –s fd.txt Is that correct? And as a second question, I would like to have only one value for FD, DVARS and RMS for each subject. Would it be then correct to calculate the mean of all values in my txtfile? Thank you very much in advance. Best Christiane