Hello,
I am trying to follow the steps in the FDT user guide:
In the processing pipeline, they mention using BET first (to get nodif_brain_mask and nodif_brain)
In the DTIFit step, they say the Input Diffusion weighted data to be data.nii.gz. Do I use the Non skull stripped data here?
Are we not going to use the skull stripped data?
Thanks.
- Anita.