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Hi Kristian,

split_parts_gpu was included in FSL 5.0.9. 
It should be in your ${FSLDIR}/bin directory.
Are you using this version of FSL?
If for any reason is not there, you can download a binary version compiled with CentOS 6.7 from here:
http://users.fmrib.ox.ac.uk/~moisesf/bedpostx/split_parts_gpu_CentOS6/split_parts_gpu.zip
And copy it to ${FSLDIR}/bin directory.

The patch in http://fsl.fmrib.ox.ac.uk/fsldownloads/patches/bedpostx-patch-fsl-5.0.9.tar.gz is for FSL 5.0.9 as well.
Did do applied that patch ?
You just need to copy all the files to your ${FSLDIR}/bin directory.

Moises.

On 21 July 2016 at 22:31, Kristian M. Eschenburg <[log in to unmask]> wrote:
Hi FSL

I'm trying to run bedpostx_gpu and am producing a series of errors:

bedpostx_gpu Diffusion/ -n 3 -b 3000 -g --model=3


Making bedpostx directory structure
Copying files to bedpostx directory
Pre-processing stage
/usr/share/fsl/bin/fsl_sub: 374: exit: Illegal number: -1
Queueing parallel processing stage

----- Bedpostx Monitor -----
/usr/share/fsl/bin/fsl_sub: 374: exit: Illegal number: -1
Queuing post-processing stage
/usr/share/fsl/bin/fsl_sub: 374: exit: Illegal number: -1


I found a previous thread ( https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=fsl;5e9b51c1.1510 ) that looked to have similar errors, but upon further inspection, I see that split_parts_gpu does not exist in ${FSLDIR}/bin.  Where can I find this script?


Thanks!


Kristian