Hi Kristian,
split_parts_gpu was included in FSL 5.0.9.
It should be in your ${FSLDIR}/bin directory.
Are you using this version of FSL?
If for any reason is not there, you can download a binary version compiled
with CentOS 6.7 from here:
http://users.fmrib.ox.ac.uk/~moisesf/bedpostx/split_parts_gpu_CentOS6/split_parts_gpu.zip
And copy it to ${FSLDIR}/bin directory.
The patch in
http://fsl.fmrib.ox.ac.uk/fsldownloads/patches/bedpostx-patch-fsl-5.0.9.tar.gz
is
for FSL 5.0.9 as well.
Did do applied that patch ?
You just need to copy all the files to your ${FSLDIR}/bin directory.
Moises.
On 21 July 2016 at 22:31, Kristian M. Eschenburg <[log in to unmask]> wrote:
> Hi FSL
>
> I'm trying to run bedpostx_gpu and am producing a series of errors:
>
> bedpostx_gpu Diffusion/ -n 3 -b 3000 -g --model=3
>
>
> Making bedpostx directory structure
> Copying files to bedpostx directory
> Pre-processing stage
> /usr/share/fsl/bin/fsl_sub: 374: exit: Illegal number: -1
> Queueing parallel processing stage
>
> ----- Bedpostx Monitor -----
> /usr/share/fsl/bin/fsl_sub: 374: exit: Illegal number: -1
> Queuing post-processing stage
> /usr/share/fsl/bin/fsl_sub: 374: exit: Illegal number: -1
>
>
> I found a previous thread (
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=fsl;5e9b51c1.1510 ) that
> looked to have similar errors, but upon further inspection, I see that
> split_parts_gpu does not exist in ${FSLDIR}/bin. Where can I find this
> script?
>
>
> Thanks!
>
>
> Kristian
>
