 |
 |
|
CAT12 r938: ./Image.nii |
|
------------------------------------------------------------------------ |
|
SANLM denoising (NCstr=Inf): 295s |
|
APP: Rough bias correction: |
|
Initialize
9s |
|
Estimate background
8s |
|
Initial correction
19s |
|
Refine background 11s |
|
Final correction
16s |
|
Background correction
1s |
|
Final scaling 4s |
|
68s |
|
Coarse affine registration
12s |
|
Affine registration
15s |
|
SPM preprocessing 1:
192s |
|
SPM preprocessing 2:
242s |
|
Global intensity correction: 34s |
|
SANLM noise correction: 5s |
|
Local adaptive segmentation
(LASstr=0.50): |
|
Prepare maps
2s |
|
Prepare partitions 3s |
|
Prepare segments
6s |
|
Estimate local tissue thresholds 312s |
|
SANLM noise correction for LAS: 8s |
|
331s |
|
ROI segmentation (partitioning): |
|
Atlas -> subject space
6s |
|
Major structures 1s |
|
Ventricle detection
3s |
|
NO WMH detection (to noisy ~0.18) 0s |
|
Closing of deep structures 1s |
|
Side alignment
3s |
|
Final corrections
3s |
|
17s |
|
Skull-stripping using graph-cut
(gcutstr=0.50): |
|
WM initialisation
[@Warning: WARNING: cat_vol_morph - lab - no object!]@ |
|
[@> In cat_vol_morph at 119 |
|
In cat_main_gcut at 93 |
|
In cat_main at 845 |
|
In cat_run_job at 541 |
|
In cat_run_newcatch at 13 |
|
In cat_run>run_job at 246 |
|
In cat_run at 154 |
|
In matlabbatch/private/cfg_run_cm at 29 |
|
In cfg_util>local_runcj at 1688 |
|
In cfg_util at 959 |
|
In
spm_jobman>fill_run_job at 458 |
|
In spm_jobman at 247]@ |
|
2s |
|
2s |
|
Amap using initial SPM12 segmentations
(MRF filter strength 0.07): MRF priors: alpha 1.000 0.000 0.000 |
|
Final Mean*Std: 0.663*0.299 -0.340*0.112 -0.340*0.030 |
|
Weighted MRF beta -nan |
|
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ 1s |
|
Final cleanup (gcutstr=0.50): |
|
Level 1 cleanup (ROI estimation) 1s |
|
Level 1 cleanup (brain masking) [@Warning:
WARNING: cat_vol_morph - lab - no object!]@ |
|
[@> In cat_vol_morph at 119 |
|
In cat_vol_morph at 107 |
|
In cat_main_cleanup at 58 |
|
In
cat_main at 965 |
|
In cat_run_job at 541 |
|
In cat_run_newcatch at 13 |
|
In cat_run>run_job at 246 |
|
In cat_run at 154 |
|
In matlabbatch/private/cfg_run_cm at 29 |
|
In cfg_util>local_runcj at 1688 |
|
In cfg_util at 959 |
|
In spm_jobman>fill_run_job at 458 |
|
In spm_jobman at 247]@ |
|
------------------------------------------------------------------------ |
|
CAT Preprocessing error:
MATLAB:dimagree: ./Image.nii |
|
------------------------------------------------------------------------ |
|
Matrix dimensions must agree. |
|
------------------------------------------------------------------------ |
|
59 - cat_main_cleanup |
|
965 - cat_main |
|
541 - cat_run_job |
|
13 - cat_run_newcatch |
|
246 - run_job |
|
154 - cat_run |
|
29 - cfg_run_cm |
|
1688 - local_runcj |
|
959 - cfg_util |
|
458 - fill_run_job |
|
247 - spm_jobman |
|
------------------------------------------------------------------------ |
|
Print 'Graphics' figure to: |
|
/Path/report/catreport_Image.pdf |
|
Failed
'CAT12: Segmentation' |
|
Error using & |
|
Matrix dimensions must agree. |
|
In file "/SPMpath/spm/toolboxes/CAT/cat12_v938/cat_main_cleanup.m"
(???), function "cat_main_cleanup" at line 59. |
|
In file
"/SPMpath/spm/toolboxes/CAT/cat12_v938/cat_main.m" (v928), function
"cat_main" at line 965. |
|
In file
"/SPMpath/spm/toolboxes/CAT/cat12_v938/cat_run_job.m" (v936),
function "cat_run_job" at line 541. |
|
In file
"/SPMpath/spm/toolboxes/CAT/cat12_v938/cat_run_newcatch.m" (???),
function "cat_run_newcatch" at line 13. |
|
In file
"/SPMpath/spm/toolboxes/CAT/cat12_v938/cat_run.m" (v936), function "run_job"
at line 246. |
|
In file
"/SPMpath/spm/toolboxes/CAT/cat12_v938/cat_run.m" (v936), function
"cat_run" at line 154. |
|
The following modules did not run: |
|
Failed: CAT12: Segmentation |
|
>> >> |