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Hi Ramesh, You should have a melodic_IC.nii.gz file that contains all of the ICs. What I do is the following: 1) Navigate to the folder contained melodic_IC 2) Copy the template you described to that same folder 3) Use flirt to get both images into the same space (ie: flirt -in melodic_IC.nii.gz -ref $FSLDIR/data/standard/MNI152_T1_2mm -out melodic_flirted -applyxfm) 4) Then when you have the flirted melodic_IC and flirted template, you can use the fslcc function to determine if there is any correlation with your ICs and the ones in the template. (fslcc --noabs -p 3 -t .204 template_flirted.nii melodic_flirted1.nii.gz) 5) This site has a good tutorial and goes through the output of fslcc http://psych.colorado.edu/~anre8906/guides/01-ica.html Hope it helps, Sheena On Thu, Jun 30, 2016 at 4:19 PM, Ramesh Babu <[log in to unmask]> wrote: > Dear Sheena and Wu, > > Sorry for interfering. I am also doing the same RSN analysis. I have > downloaded this template ( > http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/). > > Could you please tell me how to register my data (raw data or .ica data) > with their template? > > In which folder should I save this template? > > Thanks in advance > Ramesh > > > > On Wed, Jun 29, 2016 at 5:14 PM, Wu chen <[log in to unmask]> wrote: > >> Hi Sheena, >> >> Thank you so much for your reply. It really helped me. >> >> best, >> >> Wu >> >> >> >> On 24 June 2016 at 23:46, Sheena Sharma <[log in to unmask]> wrote: >> >>> Hi Wu, >>> >>> I have compared my RSN data to a template put forward by Smith et al., >>> which can be found here: >>> http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/. Then, using the >>> fslcc command you can see which of the networks in your data compare to >>> theirs. Once you've registered your data and the template, you could use >>> something like: >>> $ fslcc --noabs -p 3 -t .204 template_flirted.nii melodic_flirted1.nii.gz >>> >>> Hope it helps, >>> Sheena >>> >>> >>> On Sat, Jun 25, 2016 at 4:01 AM, Wu chen <[log in to unmask]> wrote: >>> >>>> Dear FSL experts, >>>> >>>> I am new to resting state analysis. I have a acquired a resting state >>>> fmri dataset and ran Melodic over it. I got 21 compontents as the output. >>>> Now i want to compare it with the know/standard default mode networks. How >>>> shall I do it? Can you suggest me any templates which i can use or any >>>> standard procedure for comparing DMN?? Which fsl commands can help me to do >>>> it?? >>>> >>>> >>>> I will be very thankful for all your efforts. >>>> >>>> regards, >>>> Wu >>>> >>> >>> >> >