Hi again,
Echo $FSLDIR
:/usr/local/fsl
But I am not sure to understand the following from the wiki:
FSLDIR=/usr/local/fsl
. ${FSLDIR}/etc/fslconf/fsl.sh
Thanks,
Philippe
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf Of Niels Bergsland
Sent: Monday, May 09, 2016 12:03 PM
To: [log in to unmask]
Subject: Re: [FSL] BET issue
Hi,
It sounds like you don't have your FSLDIR environment variable set.
On Mon, May 9, 2016 at 7:49 PM, Philippe Jolivalt <[log in to unmask]<mailto:[log in to unmask]>> wrote:
Hi there,
I am running a CentOS 6.7 WMware virtual machine. FSL was manually installled in default location /usr/local/fsl. There is a Matlab add-in and I am trying to run a customized-program (which runs okay on a Red Hat server) to count brain micro-bleeds. The program calls bet with /usr/local/fsl/bin/bet but I got an error I do not know how to troubleshoot, can you help? Thanks.
Error:/usr/local/fsl/bin/bet: line 151: /bin/remove_ext: No such file or directory
Error:/usr/local/fsl/bin/bet: line 154: /bin/imtest: No such file or directory
Error:/usr/local/fsl/bin/bet: line 154: [: =: unary operator expected
--
Niels Bergsland
Integration Director
Buffalo Neuroimaging Analysis Center
100 High St. Buffalo NY 14203
[log in to unmask]<mailto:[log in to unmask]>
