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"Remove alternative conformations" is an option in the CCP4i gui, in "Pdbset" and "PDBcur" of the "Program List" - and in "Coordinate Utilities", "Edit PDB File" task. Mark J van Raaij Dpto de Estructura de Macromoleculas Centro Nacional de Biotecnologia - CSIC c/Darwin 3 E-28049 Madrid, Spain tel. (+34) 91 585 4616 http://www.cnb.csic.es/~mjvanraaij <http://www.cnb.csic.es/~mjvanraaij> > On 04 May 2016, at 08:57, Tim Gruene <[log in to unmask]> wrote: > > Dear Christian, > > I could not find this documented in the pdbset man-page. However, pdbcur has > the keyword 'mostprob' which should do what Jacob wants. > > Cheers, > Tim > > On Tuesday, May 03, 2016 04:46:37 PM Christian Roth wrote: >> The ccp4 solution would be to use pdbset with the remove alternative >> conformation option >> >> Cheers >> Christian >> >> Am 03.05.2016 um 15:31 schrieb Oliver Clarke: >>> Sorry for the non-ccp4 solution, but: >>> >>> phenix.pdbtools remove_alt_confs=true mypdb.pdb >>> >>> should work. >>> >>> Cheers, >>> Oliver. >>> >>> On Mon, 2 May 2016 23:15:23 +0000, Keller, Jacob > <[log in to unmask]> wrote: >>>> Yes, okay, I'll do that--boring but not too exceedingly tedious. >>>> >>>> -----Original Message----- >>>> From: CCP4 bulletin board [mailto:[log in to unmask]] On Behalf Of >>>> Paul Emsley Sent: Monday, May 02, 2016 6:15 PM >>>> To: [log in to unmask] >>>> Subject: Re: [ccp4bb] Refmac Multiple Models? >>>> >>>> On 02/05/2016 21:52, Keller, Jacob wrote: >>>>> I think I will have to strip out a lot of alternative >>>>> conformations-anyone know how to do this automatically, perhaps in Coot? >>>> >>>> There is no built-in function to do this, it would take a few lines of >>>> scripting, >>>> >>>> but it would probably be quicker (and more boring) to use Modelling -> >>>> Residues with Alt Conf, navigate that dialog using Delete Residue [with >>>> Keep Delete Active] >>>> >>>> Paul. > -- > -- > Paul Scherrer Institut > Dr. Tim Gruene > - persoenlich - > OFLC/102 > CH-5232 Villigen PSI > phone: +41 (0)56 310 5297 > > GPG Key ID = A46BEE1A >