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I am working on some data with field maps included. The data has fairly high
distortion as we placed a TMS coil inside the MRI. The field maps can be
quite useful in this case. 

 

The SPM12 manual suggests a pipeline of 1) Realign: Estimate, 2) FieldMap to
create VDM, 3) Apply VDM.

 

However I could alternately use Realign and Unwarp. As this second option
incorporates the distortion correction into the realignment, correcting for
both motion distortion and static distortion simultaneously, I assume it is
the preferred approach. But it may be I have an incomplete understanding of
how this first pipeline would work. 

 

However as I have yet to work on fieldmaps, I thought I might solicit the
advice of the community. 

 

Colin