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Hi,

I too have fast TR multiband functional BOLD data (TR=1, for approx 1500 volumes, in 20 participants), and am trying to correct for head motion using ICA-AROMA.  It finds a large number of components in classified_motion_ICs.txt, but I now understand this is to be expected with fast TR data.  

However, I keep getting the same error in the fsl_regfilt stage near the end of the process in over half of participants data. Error is pasted below the email.  

Is there any way I can avoid this error? You suggested keeping the automatic dimensionality estimation on for the previous person on this list, but perhaps the advice would be different in this case?  Or is there anything else I can do to stop fsl_regfilt from failing?

With thanks in advance
Ella


*** buffer overflow detected ***: /usr/local/fsl/bin/fsl_regfilt terminated
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x7338f)[0x2abe42c6338f]
/lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x5c)[0x2abe42cfac9c]
/lib/x86_64-linux-gnu/libc.so.6(+0x109b60)[0x2abe42cf9b60]
/usr/local/fsl/bin/fsl_regfilt[0x413dfb]
/usr/local/fsl/bin/fsl_regfilt[0x4162f5]
/usr/local/fsl/bin/fsl_regfilt[0x4164c2]
/usr/local/fsl/bin/fsl_regfilt[0x408051]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x2abe42c11ec5]
/usr/local/fsl/bin/fsl_regfilt[0x40819e]
======= Memory map: ========
00400000-00422000 r-xp 00000000 08:01 2377474                            /usr/lib/fsl/5.0/fsl_regfilt
00621000-00622000 r--p 00021000 08:01 2377474                            /usr/lib/fsl/5.0/fsl_regfilt
00622000-00623000 rw-p 00022000 08:01 2377474                            /usr/lib/fsl/5.0/fsl_regfilt
00623000-00624000 rw-p 00000000 00:00 0 
010a6000-3933e000 rw-p 00000000 00:00 0                                  [heap]
2abe41539000-2abe4155c000 r-xp 00000000 08:01 1574591                    /lib/x86_64-linux-gnu/ld-2.19.so
2abe4155c000-2abe41560000 rw-p 00000000 00:00 0 
2abe41592000-2abe41599000 rw-p 00000000 00:00 0 
2abe4175b000-2abe4175c000 r--p 00022000 08:01 1574591                    /lib/x86_64-linux-gnu/ld-2.19.so
2abe4175c000-2abe4175d000 rw-p 00023000 08:01 1574591                    /lib/x86_64-linux-gnu/ld-2.19.so
2abe4175d000-2abe4175e000 rw-p 00000000 00:00 0 
2abe4175e000-2abe41769000 r-xp 00000000 08:01 2377454                    /usr/lib/fsl/5.0/libutils.so
2abe41769000-2abe41969000 ---p 0000b000 08:01 2377454                    /usr/lib/fsl/5.0/libutils.so
2abe41969000-2abe4196a000 r--p 0000b000 08:01 2377454                    /usr/lib/fsl/5.0/libutils.so
2abe4196a000-2abe4196b000 rw-p 0000c000 08:01 2377454                    /usr/lib/fsl/5.0/libutils.so
2abe4196b000-2abe41aea000 r-xp 00000000 08:01 2377432                    /usr/lib/fsl/5.0/libnewimage.so
2abe41aea000-2abe41ce9000 ---p 0017f000 08:01 2377432                    /usr/lib/fsl/5.0/libnewimage.so
2abe41ce9000-2abe41cea000 r--p 0017e000 08:01 2377432                    /usr/lib/fsl/5.0/libnewimage.so               
2abe41cea000-2abe41ceb000 rw-p 0017f000 08:01 2377432                    /usr/lib/fsl/5.0/libnewimage.so               
2abe41ceb000-2abe41cec000 rw-p 00000000 00:00 0                                                                        
2abe41cec000-2abe41d6e000 r-xp 00000000 08:01 2381744                    /usr/lib/fsl/5.0/libmiscmaths.so              
2abe41d6e000-2abe41f6e000 ---p 00082000 08:01 2381744                    /usr/lib/fsl/5.0/libmiscmaths.so              
2abe41f6e000-2abe41f70000 r--p 00082000 08:01 2381744                    /usr/lib/fsl/5.0/libmiscmaths.so              
2abe41f70000-2abe41f71000 rw-p 00084000 08:01 2381744                    /usr/lib/fsl/5.0/libmiscmaths.so              
2abe41f71000-2abe41fc3000 r-xp 00000000 08:01 542683                     /usr/lib/libnewmat.so.10.0.0                  
2abe41fc3000-2abe421c3000 ---p 00052000 08:01 542683                     /usr/lib/libnewmat.so.10.0.0                  
2abe421c3000-2abe421c7000 r--p 00052000 08:01 542683                     /usr/lib/libnewmat.so.10.0.0                  
2abe421c7000-2abe421c8000 rw-p 00056000 08:01 542683                     /usr/lib/libnewmat.so.10.0.0                  
2abe421c8000-2abe421cf000 r-xp 00000000 08:01 2381876                    /usr/lib/fsl/5.0/libprob.so
2abe421cf000-2abe423ce000 ---p 00007000 08:01 2381876                    /usr/lib/fsl/5.0/libprob.so
2abe423ce000-2abe423cf000 r--p 00006000 08:01 2381876                    /usr/lib/fsl/5.0/libprob.so
2abe423cf000-2abe423d0000 rw-p 00007000 08:01 2381876                    /usr/lib/fsl/5.0/libprob.so
2abe423d0000-2abe424b6000 r-xp 00000000 08:01 536147                     /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.19
2abe424b6000-2abe426b5000 ---p 000e6000 08:01 536147                     /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.19
2abe426b5000-2abe426bd000 r--p 000e5000 08:01 536147                     /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.19
2abe426bd000-2abe426bf000 rw-p 000ed000 08:01 536147                     /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.19
2abe426bf000-2abe426d4000 rw-p 00000000 00:00 0 
2abe426d4000-2abe427d9000 r-xp 00000000 08:01 1574253                    /lib/x86_64-linux-gnu/libm-2.19.so
2abe427d9000-2abe429d8000 ---p 00105000 08:01 1574253                    /lib/x86_64-linux-gnu/libm-2.19.so
2abe429d8000-2abe429d9000 r--p 00104000 08:01 1574253                    /lib/x86_64-linux-gnu/libm-2.19.so
2abe429d9000-2abe429da000 rw-p 00105000 08:01 1574253                    /lib/x86_64-linux-gnu/libm-2.19.so
2abe429da000-2abe429f0000 r-xp 00000000 08:01 1599239                    /lib/x86_64-linux-gnu/libgcc_s.so.1
2abe429f0000-2abe42bef000 ---p 00016000 08:01 1599239                    /lib/x86_64-linux-gnu/libgcc_s.so.1
2abe42bef000-2abe42bf0000 rw-p 00015000 08:01 1599239                    /lib/x86_64-linux-gnu/libgcc_s.so.1
2abe42bf0000-2abe42dab000 r-xp 00000000 08:01 1587362                    /lib/x86_64-linux-gnu/libc-2.19.so
2abe42dab000-2abe42faa000 ---p 001bb000 08:01 1587362                    /lib/x86_64-linux-gnu/libc-2.19.so
2abe42faa000-2abe42fae000 r--p 001ba000 08:01 1587362                    /lib/x86_64-linux-gnu/libc-2.19.so
2abe42fae000-2abe42fb0000 rw-p 001be000 08:01 1587362                    /lib/x86_64-linux-gnu/libc-2.19.so
2abe42fb0000-2abe42fb5000 rw-p 00000000 00:00 0 
2abe42fb5000-2abe42fc0000 r-xp 00000000 08:01 2381936                    /usr/lib/fsl/5.0/libfslio.so
2abe42fc0000-2abe431c0000 ---p 0000b000 08:01 2381936                    /usr/lib/fsl/5.0/libfslio.so
2abe431c0000-2abe431c1000 r--p 0000b000 08:01 2381936                    /usr/lib/fsl/5.0/libfslio.so
2abe431c1000-2abe431c2000 rw-p 0000c000 08:01 2381936                    /usr/lib/fsl/5.0/libfslio.so
2abe431c2000-2abe431e2000 r-xp 00000000 08:01 542232                     /usr/lib/libniftiio.so.2.0.0
2abe431e2000-2abe433e1000 ---p 00020000 08:01 542232                     /usr/lib/libniftiio.so.2.0.0
2abe433e1000-2abe433e2000 r--p 0001f000 08:01 542232                     /usr/lib/libniftiio.so.2.0.0
2abe433e2000-2abe433e3000 rw-p 00020000 08:01 542232                     /usr/lib/libniftiio.so.2.0.0
2abe433e3000-2abe433e5000 r-xp 00000000 08:01 542231                     /usr/lib/libznz.so.2.0.0
2abe433e5000-2abe435e5000 ---p 00002000 08:01 542231                     /usr/lib/libznz.so.2.0.0
2abe435e5000-2abe435e6000 r--p 00002000 08:01 542231                     /usr/lib/libznz.so.2.0.0
2abe435e6000-2abe435e7000 rw-p 00003000 08:01 542231                     /usr/lib/libznz.so.2.0.0
2abe435e7000-2abe435ff000 r-xp 00000000 08:01 1573150                    /lib/x86_64-linux-gnu/libz.so.1.2.8
2abe435ff000-2abe437fe000 ---p 00018000 08:01 1573150                    /lib/x86_64-linux-gnu/libz.so.1.2.8
2abe437fe000-2abe437ff000 r--p 00017000 08:01 1573150                    /lib/x86_64-linux-gnu/libz.so.1.2.8
2abe437ff000-2abe43800000 rw-p 00018000 08:01 1573150                    /lib/x86_64-linux-gnu/libz.so.1.2.8
2abf70173000-2ac09c901000 rw-p 00000000 00:00 0 
7ffcf98db000-7ffcf98fe000 rw-p 00000000 00:00 0                          [stack]
7ffcf99b0000-7ffcf99b2000 r-xp 00000000 00:00 0                          [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  [vsyscall]
Aborted (core dumped)