Hi Dushyant,
The methods are spread across different papers. Try having a look into these that I'm pasting below, and also the references inside each:
- Beckmann CF, Jenkinson M, Smith SM. General
multilevel linear modeling for group analysis in FMRI. Neuroimage. 2003
Oct;20(2):1052–63.
- Jenkinson M, Beckmann CF, Behrens TEJ,
Woolrich MW, Smith SM. Fsl. Neuroimage. 2011 Sep 16;62:782–90.
- Jenkinson M, Beckmann CF, Behrens TEJ,
Woolrich MW, Smith SM. Fsl. Neuroimage. 2011 Sep 16;62:782–90.
- Smith S, Jenkinson M, Beckmann CF, Miller
K, Woolrich M. Meaningful design and contrast estimability in FMRI. Neuroimage.
2007 Jan 1;34(1):127–36.
- Smith S, Jenkinson M, Beckmann CF, Miller
K, Woolrich M. Meaningful design and contrast estimability in FMRI. Neuroimage.
2007 Jan 1;34(1):127–36.
- Smith SM, Beckmann CF, Ramnani N, Woolrich
MW, Bannister PR, Jenkinson M, et al. Variability in fMRI: a re-examination of
inter-session differences. Hum Brain Mapp. 2005 Mar;24(3):248–57.
- Smith SM, Beckmann CF, Ramnani N, Woolrich
MW, Bannister PR, Jenkinson M, et al. Variability in fMRI: a re-examination of
inter-session differences. Hum Brain Mapp. 2005 Mar;24(3):248–57.
- Smith SM, Jenkinson M, Woolrich MW,
Beckmann CF, Behrens TEJ, Johansen-Berg H, et al. Advances in functional and
structural MR image analysis and implementation as FSL. Neuroimage. 2004 Jan;23(Suppl.
1):208–19.
- Smith SM, Jenkinson M, Woolrich MW,
Beckmann CF, Behrens TEJ, Johansen-Berg H, et al. Advances in functional and
structural MR image analysis and implementation as FSL. Neuroimage. 2004 Jan;23(Suppl.
1):208–19.
- Woolrich M, Ripley B, Brady J, Smith S.
Nonparametric estimation of temporal autocorrelation in FMRI. Neuroimage. 2000
May;11(5):S610–S610.
- Woolrich MW, Behrens TEJ, Beckmann CF,
Jenkinson M, Smith SM. Multilevel linear modelling for FMRI group analysis
using Bayesian inference. Neuroimage. 2004 Apr;21(4):1732–47.
- Woolrich MW, Behrens TEJ, Smith SM.
Constrained linear basis sets for HRF modelling using Variational Bayes.
Neuroimage. 2004 Apr;21(4):1748–61.
- Woolrich MW, Jbabdi S, Patenaude B,
Chappell M, Makni S, Behrens T, et al. Bayesian analysis of neuroimaging data
in FSL. Neuroimage. Elsevier B.V.; 2009 Mar;45(1 Suppl):S173–86.
- Woolrich MW, Ripley BD, Brady M, Smith SM.
Temporal autocorrelation in univariate linear modeling of FMRI data.
Neuroimage. 2001 Dec;14(6):1370–86.
Also, have a look into the Technical Reports in the FMRIB website:
http://www.fmrib.ox.ac.uk/analysis/techrep (it's down at the moment but should be back online this afternoon).
All the best,
Anderson