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Hi Dominic,
It's not clear where FSLDIR is being reset - can you run
system('/bin/sh -c "echo $FSLDIR"')
in MATLAB?
Kind Regards
Matthew
> Hi Matthew,
>
> It seems to be correct, the following is the FSL portion from the output
>
> dominic
>
>
> FSLDIR=/home/ncnc_MEG/fsl
> FSLGECUDAQ=cuda.q
> FSLLOCKDIR=
> FSLMACHINELIST=
> FSLMULTIFILEQUIT=TRUE
> FSLOUTPUTTYPE=NIFTI_GZ
> FSLREMOTECALL=
> FSLTCLSH=/home/ncnc_MEG/fsl/bin/fsltclsh
> FSLWISH=/home/ncnc_MEG/fsl/bin/fslwish