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Hi Ashok,
I am afraid you are working with a protein that elutes in the void volume of S200 column (my first thought: is it an aggregate). Try AUC or native gel to see if it is a real huge aggregate if no aggregation then running on Suprose column will help. I would do this even before thinking about crystallization.
Good luck

On Wednesday, February 24, 2016, Ashok Patel <[log in to unmask]> wrote:
Dear All,

I am working on protein 28 KDa, Construct has been made in pET28a vector with N terminal 6XHist tag, Protein expression has been optimised.

Protein is purifying nicely on NiNTA resin, as found on SDS-PAGE at expected mol weight 28-30 kDa.

Since the protein we want for crystallization and structure determination, We are applying it on Superdex 200 (HiLoad 16/60, 120 ml column) size exclusion chromatography, all protein is coming only around 45-50 ml, but on SDs-PAGE single protein around 30 kDa.

So it seems oligomerization.

we tried Size exclusion S200 with or without concentrating the NiNTA fractions 1mg/ml or around 10 mg/ml, with or without cleaving His tag, in all cases, protein is showing peak at 45-50 ml.

our Size exclusion buffer is 50 mM Tris pH 7.5, 500 mM NaCl, 10 % Glycerol, 1 mM DTT.

How to proceed? what should we try for getting the monomeric protein.? any suggestions? can we still try to set crystallization?

thanks in advance

with regards
Ashok
IIT Delhi


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Rashmi