Hi Paul,

Thank you a lot for your information.

I tried with flsroi to cut the long necks and all the problems I had mainly disappeared....but it is intersting to know that I could achieve good results with robustfov command...I am going to see about this command how it works.

Thank you :)

Rosalia.

2016-01-18 11:09 GMT+01:00 paul mccarthy <[log in to unmask]>:

Hi Rosalia,

Try using the robustfov command.

Cheers,

Paul

On 17 January 2016 at 11:42, Rosalia Dacosta Aguayo <[log in to unmask]> wrote:
Dear FSL experts,

I have realized that some of my images have too large necks. I have tried with fslroi....but for me it is being difficult how to define X Y and Z coordinates with FSLWiew...any help with this would be greatly appreciate. I had some results with some images but still find difficult how to define the corners regarding to X, Y and Z...

Yours sincerely,

Rosalia.