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Matthew,

Thank you very much for your responses and the information. As per your instructions, I created a symlink  and that solved the problem. Thanks again, your time and effort are greatly appreciated.

Cheers,
Jason 

Sent from my iPhone; please pardon any misspellings. 

On Jan 12, 2016, at 11:17 AM, Matthew Webster <[log in to unmask]> wrote:

Hello,
  I think /usr/X11 should be a link rather than a file, can you try moving the current file to a backup name, and then symlinking /usr/X11 to point at /opt/X11? http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/MacOsX covers the relevant commands in more detail.

Kind Regards
Matthew

Thanks for the reply.
This is the result.

[Mon Jan 11] /Volumes/Data/Imaging/fsl/intro
[jcraggs]$ ls -al /usr/X11*
-rwxr-xr-x@ 1 jcraggs  wheel  1295192 May  7  2015 /usr/X11
lrwxr-xr-x  1 root     wheel        8 Dec  4 12:39 /usr/X11R6 -> /opt/X11


Cheers,
Jason
---------------------------------
Jason G Craggs, Ph.D.
Assistant Professor
SHP/Physical Therapy
University of Missouri
801 Clark Hall
Columbia, MO  65211-4250

Phone: 573-884-9345

On Jan 12, 2016, at 7:28 AM, Matthew Webster <[log in to unmask]> wrote:

Hello,
 Can you let me know the result of running

ls -al /usr/X11*

is on your system?

Kind Regards
Matthew

Greetings,

I am trying to run fsl on my iMac; I have installed the latest versions of FSL & Quartz (today, 2016_01_11).

From the command line I can open and use FSLView (version 3.2.0).
However, when going through the practicals, neither the bet_gui or fsl commands work.

The errors are:

[jcraggs]$ fsl
dyld: Library not loaded: /usr/X11/lib/libX11.6.dylib
Referenced from: /usr/local/fsl/extras/bin/fslwish8.4
Reason: no suitable image found.  Did find:
/usr/X11/lib/libX11.6.dylib: stat() failed with errno=20
Trace/BPT trap: 5


*****
AND
*****

[jcraggs]$ bet_gui
dyld: Library not loaded: /usr/X11/lib/libX11.6.dylib
Referenced from: /usr/local/fsl/extras/bin/fslwish8.4
Reason: no suitable image found.  Did find:
/usr/X11/lib/libX11.6.dylib: stat() failed with errno=20
Trace/BPT trap: 5


Any help resolving the issues would be greatly appreciated.
Cheers,
Jason

____________________________________
iMac info:
Model Name: iMac
Processor Name: Intel Core i5
Processor Speed: 3.2 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Memory: 24 GB
Boot ROM Version: IM142.0118.B12