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Hi,

Import from NmrStar generally works well, so if you use formatConverter or ECI to generate an "entry", export that, and import it into your new project, you should get shifts and sequence info correctly linked. With judicious use of a text editor, you should be able to slim the NmrStar file down so that you get the shiftList without all the peakLists/experiments/spectra.

Alternatively, save your project to a new name (archive it first in case of mistakes!) and delete all the spectra - the shiftList should remain intact.

Dr. Brian O. Smith --------------------------- Brian Smith at glasgow ac uk
Institute of Molecular, Cell and Systems Biology & School of Life Sciences,
          College of Medical, Veterinary & Life Sciences,
  Joseph Black Building, University of Glasgow, Glasgow G12 8QQ, UK.
Tel: 0141 330 5167/6459/3089
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The University of Glasgow, charity number SC004401
From: CcpNmr software mailing list [[log in to unmask]] on behalf of Fowler, Andrew [[log in to unmask]]
Sent: 29 January 2016 14:42
To: [log in to unmask]
Subject: Re: Transferring assignment to new project

Hi Lee,

I have two thought for you on this, someone else (Wayne?) can chime in if I miss something.

First, how are you importing your sequence? If you start FormatConverter -> Import -> Single files -> Sequence -> Xeasy and click on the Additional options triangle, there’s an option for Sequence code start which should do what you want.

Alternately, how is your Xeasy sequence file formatted? I’ve been doing some CYANA calculations (which use the Xeasy format) that start at residue 117 and the residue numbers are all specified, I would think Analysis can pick up on this but haven’t tried. The first few lines are:

SER 117
SER 118
LYS 119
etc.

Cheers,
Andrew


From: "CcpNmr software mailing list <[log in to unmask]>" <[log in to unmask]> on behalf of "Freiburger, Lee" <[log in to unmask]>
Reply-To: "CcpNmr software mailing list <[log in to unmask]>" <[log in to unmask]>
Date: Friday, January 29, 2016 at 8:09 AM
To: "CcpNmr software mailing list <[log in to unmask]>" <[log in to unmask]>
Subject: Transferring assignment to new project

Hi

I have been trying to transfer an assignment from one project to another. After hour of cleaning up peaks and assignments I have manged to get analysis to export my assignments in the Xeasy format: .seq, .prot, .peaks, .assign


When I try to import my .seq file it sets the start amino acid to '1' and gives no option to change it. Even after setting the start number to the appropriate number under the molecule window, in my case 259, the seq code does not change. The problem is when I import the remaining files it thinks my protein sequence still starts at '1'. So my sequence is set from 1-279. Meanwhile my shifts are set from 259-529 and assigns according, so my shifts corresponding to 259-279 are assigned to the last residues of the sequence.


What can I do to fix this.

​Regards

Lee



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