Actually I did follow the advice. Here is the output of env | grep FSL

FSLMULTIFILEQUIT=TRUE

FSLTCLSH=/usr/bin/tclsh

FSLMACHINELIST=

FSLREMOTECALL=

FSLWISH=/usr/bin/wish

FSLBROWSER=/etc/alternatives/x-www-browser

FSLDIR=/usr/share/fsl/5.0

FSLLOCKDIR=

FSLOUTPUTTYPE=NIFTI_PAIR

Any suggestion based on that ??

Qasim Bukhari, M.Sc.

Doctoral Researcher
Institute for Biomedical Engineering
ETH and University of Zurich

Address: HIT E22.1, Wolfgang-pauli-Str. 27, CH-8093 Zurich

Email: [log in to unmask]

Phone: +41 44 633 65 45

---

Date: Thu, 10 Dec 2015 14:05:12 +0100
From: [log in to unmask]

Subject: Re: [FSL] Ubuntu FSL installation
To: [log in to unmask]

Did you follow Michael's advice and update your .bashrc or .bashprofile? It sounds like you have not.

What's the output of:

env | grep FSL

On Thu, Dec 10, 2015 at 2:01 PM, Qasim Bukhari <[log in to unmask]> wrote:

Dear Michael

Thanks for the tip, but I actually already tried it. I had been using FSL on my Mac for quite some tiem now, but when I have switched to Ubuntu 15.04 I m seeing some errors in setting up

Actually if I try to explain more deeper the error its like this " error while loading shared libraries: libnewimage.so: cannot open shared object file: No such file or directory"

It has been discussed in the past on the FSL mailing list, and I went through all the msgs, but there wasnt really a solution to this. You can see in the previous posts, none really proposes a solution to this issue, though there had been some discussions.

Can someone please suggest something ?

Thanks and best

Qasim

Qasim Bukhari, M.Sc.

Doctoral Researcher
Institute for Biomedical Engineering
ETH and University of Zurich

Address: HIT E22.1, Wolfgang-pauli-Str. 27, CH-8093 Zurich

Email: [log in to unmask]

Phone: +41 44 633 65 45

---

Date: Thu, 10 Dec 2015 06:12:47 +0100
From: [log in to unmask]
Subject: Re: [FSL] Ubuntu FSL installation
To: [log in to unmask]

Hi,

please check the manpage

man fsl

in essence do:

. /etc/fsl/fsl.sh

Cheers,

Michael

On Dec 10, 2015 02:11, "Qasim Bukhari" <[log in to unmask]> wrote:

Dear all,

I made a new installation of FSL on Ubuntu using Neurodebian. However the files are installed in a way as such that if I type any file I have to write fsl5.0 before it. For example if I type dual_regression it wont find it, unless I write fsl5.0-dual_regression. The problem is, FSLDIR is also not set, and I am not really able to set it. My commands are running from usr/local, but there is no fsl.sh or fslconf folder there. 

Can somebody please help in this if they had a similar issue ??

best

Qasim

Qasim Bukhari, M.Sc.

Doctoral Researcher
Institute for Biomedical Engineering
ETH and University of Zurich

Address: HIT E22.1, Wolfgang-pauli-Str. 27, CH-8093 Zurich

Email: [log in to unmask]

Phone: +41 44 633 65 45

--

Niels Bergsland
Integration Director
Buffalo Neuroimaging Analysis Center
100 High St. Buffalo NY 14203
[log in to unmask]