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Hi,

For bedpostx, yes, I think is better to use the CUDA version.

The binaries are only included in the CentOS 6 distribution,
but you can compile  the CUDA source code and it should work with Ubuntu
and CUDA 7.5.

First you need to set some variables:
export FSLDEVDIR=$FSLDIR
export COMPILE_GPU=1
export CUDA='path to your CUDA directory' (/usr/local/cuda for instance)

You also need to set $FSLCONFDIR and $FSLMACHTYPE:
export FSLCONFDIR=$FSLDIR/config
export FSLMACHTYPE=`$FSLDIR/etc/fslconf/fslmachtype.sh`

And to compile it:
cd $FSLDIR/src/fdt
make install

Let me know if you find problems doing it.

Moises.


On 12 December 2015 at 20:50, d m <[log in to unmask]> wrote:

> Hello,
>
> We are using linux Ubuntu 14.04 and are setting up SGE to run fsl parallel
> processing.
>
> However, when typing the following command:
>
>
>
> [%] sudo -u sgeadmin qconf -am myusername
>
> error: commlib error: access denied (client IP resolved to host name
> "localhost". This is not identical to clients host name "
> server.domain.name")
> ERROR: unable to contact qmaster using port 6444 on host "
> server.domain.name"
>
>
> I've installed it the same way we previously installed gridengine with
> Ubuntu 10.04.
>
> I found the following link:
>
> https://scidom.wordpress.com/2012/01/18/sge-on-single-pc/
> <https://scidom.wordpress.com/2012/01/18/sge-on-single-pc/>
>
> Where it mentions to edit the /etc/hosts file. I'm hesitant to do this
> since I fear it may cause harm to our system. Additionally, this step was
> not needed in Ubuntu 10.04.
>
> Are we better off just using alternative methods instead, such as condor? We
> also have a GPU with Cuda 7.5 installed. Does this only work for CentOS 6
> or CentOS 6.5? Can it work with Ubuntu?  I searched for the bedpostx_gpu
> command but could not find it. We are currently running fsl 5.0.9.
>
> Any help would greatly be appreciated.
>
>
> Sincerely,
>
>
> D.M.
>