 |
 |
Hi Jerry,I don't quite know why your python installation is set up this way, but it seems to be getting caught in an infinite recursive loop when it starts up, while trying to load installed third party packages.Try this:1. Open "/usr/local/lib64/python2.7/site-packages/_local.pth" in a text editor (you may need sudo privileges)2. Put a '#' character at the beginning of the line (effectively commenting it out).3. Try running python again. If it works (you should be presented with a prompt for the python interpreter), then try running FEAT again.Cheers,PaulOn 4 November 2015 at 21:45, Jerry Chen <[log in to unmask]> wrote:Hi Paul,
Typing 'python' into a terminal window appears to return the same error that we received in Feat:
swarren@shasta:~> python
Error processing line 1 of /usr/local/lib64/python2.7/site-packages/_local.pth:
Error processing line 1 of /usr/local/lib64/python2.7/site-packages/_local.pth:
Error processing line 1 of /usr/local/lib64/python2.7/site-packages/_local.pth:
Traceback (most recent call last):
File "/usr/lib64/python2.7/site.py", line 152, in addpackage
exec line
File "<string>", line 1, in <module>
File "/usr/lib64/python2.7/site.py", line 190, in addsitedir
addpackage(sitedir, name, known_paths)
File "/usr/lib64/python2.7/site.py", line 162, in addpackage
for record in traceback.format_exception(*sys.exc_info()):
File "/usr/lib64/python2.7/traceback.py", line 141, in format_exception
list = list + format_tb(tb, limit)
File "/usr/lib64/python2.7/traceback.py", line 76, in format_tb
return format_list(extract_tb(tb, limit))
File "/usr/lib64/python2.7/traceback.py", line 101, in extract_tb
line = linecache.getline(filename, lineno, f.f_globals)
File "/usr/lib64/python2.7/linecache.py", line 14, in getline
lines = getlines(filename, module_globals)
File "/usr/lib64/python2.7/linecache.py", line 40, in getlines
return updatecache(filename, module_globals)
File "/usr/lib64/python2.7/linecache.py", line 127, in updatecache
with open(fullname, 'rU') as fp:
RuntimeError: maximum recursion depth exceeded
Remainder of file ignored
Python 2.7.8 (default, Sep 30 2014, 15:34:38) [GCC] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>>
Any ideas or suggestions are most welcome.
Thank you,
JerryOn Wed, Nov 4, 2015 at 12:36 PM, paul mccarthy <[log in to unmask]> wrote:Hi Jerry,What happens when you type 'python' into a terminal?Thanks,PaulOn 4 November 2015 at 03:38, Jerry Chen <[log in to unmask]> wrote:Hi All,
We are running into an issue when attempting to run PPI on a single subject’s first-level analysis in FEAT. Once we run FEAT, we get the following error in post-stats:
“Post-stats
zstat1
Error processing line 1 of /usr/local/lib64/python2.7/site-packages/_local.pth:
Error processing line 1 of /usr/local/lib64/python2.7/site-packages/_local.pth:
Error processing line 1 of /usr/local/lib64/python2.7/site-packages/_local.pth:
Traceback (most recent call last):
File "/usr/lib64/python2.7/site.py", line 152, in addpackage
exec line
File "", line 1, in
File "/usr/lib64/python2.7/site.py", line 190, in addsitedir
addpackage(sitedir, name, known_paths)
File "/usr/lib64/python2.7/site.py", line 162, in addpackage
for record in traceback.format_exception(*sys.exc_info()):
File "/usr/lib64/python2.7/traceback.py", line 141, in format_exception
list = list + format_tb(tb, limit)
File "/usr/lib64/python2.7/traceback.py", line 76, in format_tb
return format_list(extract_tb(tb, limit))
File "/usr/lib64/python2.7/traceback.py", line 101, in extract_tb
line = linecache.getline(filename, lineno, f.f_globals)
File "/usr/lib64/python2.7/linecache.py", line 14, in getline
lines = getlines(filename, module_globals)
File "/usr/lib64/python2.7/linecache.py", line 40, in getlines
return updatecache(filename, module_globals)
File "/usr/lib64/python2.7/linecache.py", line 127, in updatecache
with open(fullname, 'rU') as fp:
RuntimeError: maximum recursion depth exceeded
Remainder of file ignored
while executing
"if { [ catch {
for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
switch -- [ lindex $argv $argindex ] {
-I {
incr arginde..."
(file "/usr/local/fsl/bin/feat" line 310)
Error encountered while running in main feat script, halting.
zstat1
Error processing line 1 of /usr/local/lib64/python2.7/site-packages/_local.pth:
Error processing line 1 of /usr/local/lib64/python2.7/site-packages/_local.pth:
Error processing line 1 of /usr/local/lib64/python2.7/site-packages/_local.pth:
Traceback (most recent call last):
File "/usr/lib64/python2.7/site.py", line 152, in addpackage
exec line
File "", line 1, in
File "/usr/lib64/python2.7/site.py", line 190, in addsitedir
addpackage(sitedir, name, known_paths)
File "/usr/lib64/python2.7/site.py", line 162, in addpackage
for record in traceback.format_exception(*sys.exc_info()):
File "/usr/lib64/python2.7/traceback.py", line 141, in format_exception
list = list + format_tb(tb, limit)
File "/usr/lib64/python2.7/traceback.py", line 76, in format_tb
return format_list(extract_tb(tb, limit))
File "/usr/lib64/python2.7/traceback.py", line 101, in extract_tb
line = linecache.getline(filename, lineno, f.f_globals)
File "/usr/lib64/python2.7/linecache.py", line 14, in getline
lines = getlines(filename, module_globals)
File "/usr/lib64/python2.7/linecache.py", line 40, in getlines
return updatecache(filename, module_globals)
File "/usr/lib64/python2.7/linecache.py", line 127, in updatecache
with open(fullname, 'rU') as fp:
RuntimeError: maximum recursion depth exceeded
Remainder of file ignored”
Currently our model has a total of seven EVs. The first five are psychological EVs (positive stimulus, negative stimulus, and cognitive load levels 1 – 3). Our sixth EV is the physiological timecourse for our single subject’s filtered func data. Our last EV is the interaction of a single psychological variable with the filtered func timecourse.
We are wondering if this error is an issue with regards to our FSL package software version 5.0.8 (as it references Python in the error?), rather than our actual model? We are running FSL on a Linux system with Opensuse. Any input on this would be much appreciated!
Best,
Jerry Chen