Dear FSL experts,

I am analyzing resting-state fMRI data for graph theory analyses.

Before extracting the ROI values I would like to apply scrubbing to my data.

At what point in the analysis should I apply scrubbing?

Can I do the following:
Step 1) motion correction with mcflirt
Step 2) calculate timepoints with excessive movement with --dvars option

Step 3) apply scrubbing with fsl_regfit

Step 4)   remove the first timepoints
Step 5)   do slice timing correction
Step 6)   realign
Step 7)   normalize
Step 8)   apply filtering
Step 9)   regress WM and CSF signals
Step 10) extract values of ROIs.

Is this correct? Or should I make the motion correction and scrubbing (Steps 1-3) after Step 8?

Thank you so much!