Dear FSL’ers,

 

I am running a TBSS analysis with two groups (G00,G11) with Step 1 and Step 2 working fine so far, but when I run Step 3 (tbss_3_postreg -S) from the TBSS main folder it gives me the following message and error:

 

merging all upsampled FA images into single 4D image

creating valid mask and mean FA

Killed

Image Exception : #22 :: ERROR: Could not open image mean_FA_mask

terminate called after throwing an instance of 'RBD_COMMON::BaseException'

Aborted

Killed

skeletonising mean FA

Image Exception : #22 :: ERROR: Could not open image mean_FA

terminate called after throwing an instance of 'RBD_COMMON::BaseException'

Aborted

now view mean_FA_skeleton to check whether the default threshold of 0.2 needs changing, when running:

tbss_4_prestats <threshold>

 

TBSS manages to create the merged 4D nifty but not the mean_FA_mask for some reason.

 

Do you have an idea what the problem may be?

 

Thanks and bests,

 

Philipp

--
Philipp Neukam, M.Sc. Psych.
PhD Student / Doktorand

Technische Universität Dresden
Faculty of Medicine Carl Gustav Carus
Department of Psychiatry & Psychotherapy
Section of Systems Neuroscience

Würzburger Straße 35
01187 Dresden
Germany

Phone:  +49 (0) 351 463 - 42217

Fax:      +49 (0) 351 463 - 42202

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