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Have you used PISA - that generates all likely oligimersand allows you to download them. Eleanor On 19 November 2015 at 21:35, Jose Duarte <[log in to unmask]> wrote: > You can use the EPPIC server http://www.eppic-web.org, which will list > all crystal contacts present in the lattice. Is that the kind of thing that > you are looking for? > > If you really want to get into the coding and do some more powerful > things, under the hood it's all based in Biojava ( > https://github.com/biojava). You could check it out and play with the > code to generate symmetry mates and do other things with contacts and > interfaces. > > Jose > > > On Thu, Nov 19, 2015 at 12:45 PM, Edward Snell <[log in to unmask]> > wrote: > >> PS. Shameless plug: The program for the Gordon Research Conference on >> Diffraction Methods in Structural Biology (Probing the Structure and >> Dynamics of Macromolecules) will be available after the end of the month. >> This will be its 40th anniversary and we’re making it a good one. Save the >> date, *JULY* 17th-22nd, 2016. >> >> >> >> Edward Snell Ph.D. >> >> CEO Hauptman-Woodward Medical Research Institute >> >> Assistant Prof. Department of Structural Biology, SUNY Buffalo >> >> 700 Ellicott Street, Buffalo, NY 14203-1102 >> >> Phone: (716) 898 8631 Fax: (716) 898 8660 >> >> Skype: eddie.snell Email: [log in to unmask] >> >> >> >> Heisenberg was probably here! >> >> >> >> *From:* Edward Snell >> *Sent:* Thursday, November 19, 2015 3:30 PM >> *To:* [log in to unmask] >> *Subject:* Generating alternative oligomer mates from a PDB structure >> >> >> >> Dear CCP4, >> >> >> >> Five days in a lab saves an hour in the library and I figuratively >> decided to follow that advice before I dust of my rusty coding skills. >> Given an existing PDB does anyone know of a utility or have some useful >> code that could generate alternative symmetry mates for oligomers? As an >> example, if I have a dimer presented as a biological unit in the PDB I >> would like to be able to pull out all possible dimers independent of the >> one already defined. I’m looking at this as a trivial exercise, not any >> complicated means of accomplishing it. While it’s easy to do this one at a >> time, it gets more time consuming with a larger number. There is a >> practical purpose! >> >> >> >> Any help is appreciated, >> >> >> >> Thanks, >> >> >> >> Eddie >> >> >> >> PS. Shameless plug: The program for the Gordon Research Conference on >> Diffraction Methods in Structural Biology (Probing the Structure and >> Dynamics of Macromolecules) will be available after the end of the month. >> This will be its 40th anniversary and we’re making it a good one. Save >> the date, ***June**** 17th-22nd, 2016. >> >> >> >> Edward Snell Ph.D. >> >> CEO Hauptman-Woodward Medical Research Institute >> >> Assistant Prof. Department of Structural Biology, SUNY Buffalo >> >> 700 Ellicott Street, Buffalo, NY 14203-1102 >> >> Phone: (716) 898 8631 Fax: (716) 898 8660 >> >> Skype: eddie.snell Email: [log in to unmask] >> >> >> >> Heisenberg was probably here! >> >> >> > >