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Hi - you need to add the --uncorrp option when you run randomise.

On Thu, Oct 8, 2015 at 6:32 AM, Jeongsik Kim <[log in to unmask]> wrote:
> Hi FSL users,
> For my FA data from two groups (31 patients, 30 controls), I ran randomise process as follows.
> "randomise -i all_FA_skeletonised -o tbss -m mean_FA_skeleton_mask -d design.mat -t design.con -n 5000 --T2".
>
> But I couldn't find the "tfce_p_tstat1(2).nii.gz" file, whereas "tfce_corrp_tstat1(2).nii.gz".
> Did I do something wrong?
>
> I couldn't find any significance from tfce_corrp_tstat1(2). So I would like to see the uncorrected finding.
>
> Could someone please point me in the right direction?
>
> Thanks,
>
> Jeongsik Kim PhD.
> Samsung Medical Center, Seoul Korea.



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Niels Bergsland
Integration Director
Buffalo Neuroimaging Analysis Center
100 High St. Buffalo NY 14203
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