Print

Print
Hi,
I'm pretty sure the latest fslview version is 4.0.1. That's what I am using at least, so it shouldn't be related to that.

I have been able to reproduce your problem though - are you perhaps not following the instructions as given in the wiki? Only the basestruct image should be set to mask/label. If set the corrp image to mask/label as well, it won't display the significant areas. This should be set to "Statistic" (which is the default for me for this image).



On Thu, Sep 17, 2015 at 1:11 PM, Maria Serra <[log in to unmask]> wrote:
Niels,

I've tried to download the script again but it still does not work.

When I run the script the images open correctly, but when I open the 3D view, this error comes out:

Inline image 1

I just realized that, although I am using the FSL version 5.0.8, the FSL view  is using the version 4.0.1. Maybe the problem rely on this fact? If so, how could I fix it? I downloaded the whole package and FSL opens FSL view with this old version by default.

Many thanks again

On Thu, Sep 17, 2015 at 12:43 PM, Niels Bergsland <[log in to unmask]> wrote:
Hi Maria,
I am not having any trouble created it (see attached). I don't think
there have been major changes to the first3Dview script (the most
recent one is in fact from 2012), but can you try downloading the
script again (http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIRST/UserGuide?action=AttachFile&do=view&target=first3Dview.zip)
and redoing the process?



On Thu, Sep 17, 2015 at 12:14 PM, Maria Serra <[log in to unmask]> wrote:
> Hi Niels,
>
> please find attached the mask and corrp image.
>
> Thank you!
>
> On Thu, Sep 17, 2015 at 11:56 AM, Niels Bergsland <[log in to unmask]>
> wrote:
>>
>> Hi - if you can make the mask and corrp image available, I can try to
>> take a look.
>>
>> On Wed, Sep 16, 2015 at 11:42 AM, Maria Serra <[log in to unmask]>
>> wrote:
>> > Hi,
>> >
>> > please find attached a screenshot of my 3D rendering.
>> >
>> > Also, the output of the fslstats corrp_fstat1_output_randomise -R
>> > coomand is
>> > the following:
>> >
>> > 0.000000 0.985800
>> >
>> > And finally, I just realized that when I run the first3Dview, it comes
>> > up
>> > with this error:
>> >
>> > 80
>> > ERROR: In /build/buildd/vtk-5.8.0/Graphics/vtkDecimatePro.cxx, line 163
>> > vtkDecimatePro (0x482b6c80): No data to decimate!
>> >
>> > ERROR: In /build/buildd/vtk-5.8.0/Graphics/vtkSmoothPolyDataFilter.cxx,
>> > line
>> > 211
>> > vtkSmoothPolyDataFilter (0x3f4ac400): No data to smooth!
>> >
>> > which is probably related with my problem.
>> >
>> > Hope this information helps.
>> >
>> > Maria
>>
>>
>>
>> --
>> Niels Bergsland
>> Integration Director
>> Buffalo Neuroimaging Analysis Center
>> 100 High St. Buffalo NY 14203
>> [log in to unmask]
>
>
>
>
> --
> Maria
>
>
> P Abans d'imprimir aquest correu electrònic pensa bé si és necessari fer-ho.



--
Niels Bergsland
Integration Director
Buffalo Neuroimaging Analysis Center
100 High St. Buffalo NY 14203
[log in to unmask]



--
Maria


P Abans d'imprimir aquest correu electrònic pensa bé si és necessari fer-ho.



--
Niels Bergsland
Integration Director
Buffalo Neuroimaging Analysis Center
100 High St. Buffalo NY 14203
[log in to unmask]