the ICA-based automatic denoising tool is FIX (http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIX). It’s not included in FSL yet, so you have to download and install it.

For manual identification/removal of artefacts after single subject ICA you can use the FSL command fsl_regfilt instead (http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/MELODIC#fsl_regfilt_command-line_program)

Best,

Ludovica

—

Ludovica Griffanti, PhD

Analysis Postdoctoral Research Assistant
Oxford Centre for Functional MRI of the Brain (FMRIB)
Nuffield Department of Clinical Neurosciences, University of Oxford
John Radcliffe Hospital
Oxford, OX3 9DU, UK
email: [log in to unmask]

On 3 Jul 2015, at 11:17, Christophe Habas <[log in to unmask]> wrote:

Dear Experts,

Would you remind me the command to use in order to denoise functional data with ICA components before FEAT processing?

many thanks;

Best,
Christophe