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Thanks Anderson! Some follow-up questions: As far as I understand Feat doesn't support second level analysis for less than three inputs. If I got you right, you suggest to perform four second level Feats, each with two inputs. How can this be done? In the meantime I tried to run the analysis only on the first set of runs, and seems like it works. The problem is that the rendered_thresh_zstat.nii files don't open properly on fslview. The anatomical image underneath looks fine, but the stat image is black and white and strange-looking. This only happens when I try to perform more than 5 contrasts on the same Feat run. Any idea as to why this should happen? And another question on a different matter: I'm trying to get a functional 4d nifty registered to MNI. When trying to run applyxfm4d using the example_func2highres.mat file from the .feat dir, I get "Could not open matrix file functional/F1/reg/example_func2highres.mat/MAT_00000 Segmentation fault (core dumped)" Many thanks, - Matan