Dear All,
I want to superpose the
nucleotide form one GTPase on to the nucleotide of other GTPase in
order to study
the interaction
in the nucleotide binding pocket. I tried to superpose but it is
superposing on the basis of secondary structure as a
result both the
nucleotides from two structutres are not properly aligned. I want to
superpose both the nucleotide, so that I will get the matrix, which I
want to apply on my desired strcuture and study the interacting
residues.
Do any one have
the align program with you or any other program which can solve this
problem.
waiting for your
kind response
regards
vijay
