Sorry for the long delay in response.
I have just uploaded the latest fix to the ever-changing file
naming conventions of phenix.refine that I hope will be robust in
the future. You can get the latest version of the END/RAPID
script from here:
http://bl831.als.lbl.gov/END/RAPID/end.rapid/Documentation/documentation.htm
I'm still working on a "REFMAC version", but most of the problems
lie in how to define a user interface that is transparent to all
the different ways people like to run REFMAC (ccp4i, scripts,
coot, etc.). Ostensibly, however, it shouldn't be hard to
generate your own "kicked.mtz" data files using my kick_data.com
scripts, run the refinements however you like, and then generate
the RAPID map yourself using the map_rmsd.com script that ships
with the END/RAPID package.
HTH!
-James Holton
MAD Scientist
On 2/5/2015 1:03 AM, Isabel Garcia-Saez wrote:
