Hello,
I am trying to run an ANCOVA model in FSL. I have one factor, 4 levels and I have 4 covariates. However, I am not sure how to set up the contrasts.
I read the information on the FSLWiki and I have the following design matrix
design.mat (just as an example)
Sub 1 1 0 0 0 C1 C2 C3 C4
Sub 2 1 0 0 0 C1 C2 C3 C4
Sub 3 0 1 0 0 C1 C2 C3 C4
Sub 4 0 1 0 0 C1 C2 C3 C4
Sub 5 0 0 1 0 C1 C2 C3 C4
Sub 6 0 0 1 0 C1 C2 C3 C4
Sub 7 0 0 0 1 C1 C2 C3 C4
Sub 8 0 0 0 1 C1 C2 C3 C4
For the contrast (design.con), I have the following
1 0 0 -1 0 0 0 0
0 1 0 -1 0 0 0 0
0 0 1 -1 0 0 0 0 For the F-test
Can I have the following contrasts? (all other pairwise comparisons between the groups)
1 -1 0 0 0 0 0 0
-1 1 0 0 0 0 0 0
1 0 -1 0 0 0 0 0
-1 0 1 0 0 0 0 0
-1 0 0 1 0 0 0 0
0 1 -1 0 0 0 0 0
0 -1 1 0 0 0 0 0
0 -1 0 1 0 0 0 0
0 0 -1 1 0 0 0 0
Thanks for the help,
Bedda