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Not sure what you guys are trying to accomplish, but I used the "hollow" package which generates probe atoms in PDB format suitable for loading into PyMol or coot. (Have not worked with this for a while hopefully I don't have to eat my words (-: ) http://hollow.sourceforge.net/ HTH Carsten -----Original Message----- From: Mailing list for users of COOT Crystallographic Software [mailto:[log in to unmask]] On Behalf Of Oliver Clarke Sent: Tuesday, March 31, 2015 2:58 PM To: [log in to unmask] Subject: Re: [COOT] Export HOLE-coot atoms as pdb Hi Alex, I don't believe there is a way to do this at present (the probe dots are not atoms and as such cannot be manipulated in the same way), but I would also find this useful, for exactly this purpose. Cheers, Oliver. On Mon, 30 Mar 2015 14:00:03 -0700, Alexander Kintzer <[log in to unmask]> wrote: >Hello all, > >I am looking to export the probe atoms generated by HOLE in coot as a >pdb or equivalent to make a figure in pymol or chimera. The probes are >visible in coot and I can make plots of probe radius vs coordinate, but >haven't found a way to export the probe coordinates in the documentation. > >any suggestions would be appreciated. > >best, >Alex >