I use LMDE MATE Edition
You find attached the autoaq I'm using
I do not find the link you are talking about.
Thanks
2015-01-08 10:20 GMT+01:00 Anderson M. Winkler <[log in to unmask]>:
> Dear Alessandro,
>
> Could you please upload the file to here? You should have just received an
> email with a link and some instructions.
>
> Thanks!
>
> All the best,
>
> Anderson
>
>
> On 7 January 2015 at 13:56, Alessandro Bellini <[log in to unmask]> wrote:
>
>> Hello,
>> I've updated FSL to the new version (5.0.8) and my problem shows up again!
>>
>> analisi@analisi-hp-linux ~/Ale/TBSS/CIS/prova/Proc/stats $ autoaq -i
>> tbss_tfce_corrp_tstat2.nii.gz -t 0.95 -o report.txt -a "JHU White-Matter
>> Tractography Atlas"
>> /usr/lib/fsl/5.0/autoaq: riga 143: 4437 Segmentation fault
>> ${FSLDIR}/bin/atlasquery -a "${ATLAS}" -m ${TMPNAME}_${cstr} >> ${NEWOUT}
>>
>> Thanks for your help!
>>
>> 2014-12-11 16:15 GMT+01:00 Anderson M. Winkler <[log in to unmask]>:
>>
>>> Hi Alessandro,
>>>
>>> That line, containing "tmp_${RNDSTR}_${cstr}" has been changed in the
>>> version that is now included in FSL, so it looks you were really using the
>>> previous version from the website. Nonetheless, a segmentation fault has to
>>> be a problem with the atlasquery (i.e. the binary backend), so my
>>> recommendation is really to update to 5.0.8 and, if the problem persists,
>>> please let us know.
>>>
>>> Thanks!
>>>
>>> All the best,
>>>
>>> Anderson
>>>
>>>
>>> On 11 December 2014 at 14:51, Alessandro Bellini <[log in to unmask]>
>>> wrote:
>>>
>>>> I try to use directly atlasquery and I have the following message
>>>>
>>>> analisi@analisi-hp-linux ~/Ale/TBSS/CIS/Proc/stats $ *atlasquery -a
>>>> "JHU White-Matter Tractography Atlas" -m tbss_tfce_corrp_tstat2.nii.gz *
>>>> Anterior thalamic radiation L:1.33074
>>>> Anterior thalamic radiation R:0.893303
>>>> Corticospinal tract L:0.778339
>>>> Corticospinal tract R:0.555696
>>>> Cingulum (cingulate gyrus) L:0.315727
>>>> Cingulum (cingulate gyrus) R:0.0544736
>>>> Cingulum (hippocampus) L:0.153622
>>>> Cingulum (hippocampus) R:0.163147
>>>> Forceps major:1.01173
>>>> Forceps minor:2.53899
>>>> Inferior fronto-occipital fasciculus L:1.66984
>>>> Inferior fronto-occipital fasciculus R:1.71571
>>>> Inferior longitudinal fasciculus L:1.41508
>>>> Inferior longitudinal fasciculus R:1.02592
>>>> Superior longitudinal fasciculus L:1.45333
>>>> Superior longitudinal fasciculus R:0.883632
>>>> Uncinate fasciculus L:0.592347
>>>> Uncinate fasciculus R:0.311303
>>>> Superior longitudinal fasciculus (temporal part) L:0.701945
>>>> Superior longitudinal fasciculus (temporal part) R:0.38773
>>>> *Segmentation fault*
>>>>
>>>>
>>>>
>>>>
>>>> 2014-12-11 9:58 GMT+01:00 Alessandro Bellini <[log in to unmask]>:
>>>>
>>>>> Hi
>>>>>
>>>>> I'm using FSL version 5.0.7.4 and I'm using the script that comes with
>>>>> it.
>>>>>
>>>>> Thanks
>>>>>
>>>>> Alessandro
>>>>>
>>>>> 2014-12-10 18:00 GMT+01:00 Anderson M. Winkler <[log in to unmask]
>>>>> >:
>>>>>
>>>>> Hi Alessandro,
>>>>>>
>>>>>> The autoaq has been integrated into FSL. Please, make sure that you
>>>>>> are using the latest FSL (5.0.8) and that you are invoking the script that
>>>>>> comes with it, that is, ${FSLDIR}/bin/autoaq. This version supersedes the
>>>>>> previous version of autoaq that was available at brainder.org.
>>>>>>
>>>>>> All the best,
>>>>>>
>>>>>> Anderson
>>>>>>
>>>>>>
>>>>>> On 10 December 2014 at 16:17, Alessandro Bellini <[log in to unmask]>
>>>>>> wrote:
>>>>>>
>>>>>>> Hi all,
>>>>>>> I'm trying to use autoaq for the first time on my TBSS data. I have
>>>>>>> an error while using autoaq.
>>>>>>>
>>>>>>> autoaq -i tbss_tfce_corrp_tstat2.nii.gz -t 0.95 -o report.txt -a
>>>>>>> "JHU White-Matter Tractography Atlas"
>>>>>>>
>>>>>>> /usr/lib/fsl/5.0/autoaq: riga 151: 6386 Segmentation fault
>>>>>>> ${FSLDIR}/bin/atlasquery -a "${ATLAS}" -m tmp_${RNDSTR}_${cstr} >> ${OUT}
>>>>>>>
>>>>>>> I've downloaded the last autoaq script from the web.
>>>>>>>
>>>>>>> Thanks
>>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>
>>>
>>
>
