Hello,
I've updated FSL to the new version (5.0.8) and my problem shows up again!
analisi@analisi-hp-linux ~/Ale/TBSS/CIS/prova/Proc/stats $ autoaq -i
tbss_tfce_corrp_tstat2.nii.gz -t 0.95 -o report.txt -a "JHU White-Matter
Tractography Atlas"
/usr/lib/fsl/5.0/autoaq: riga 143: 4437 Segmentation fault
${FSLDIR}/bin/atlasquery -a "${ATLAS}" -m ${TMPNAME}_${cstr} >> ${NEWOUT}
Thanks for your help!
2014-12-11 16:15 GMT+01:00 Anderson M. Winkler <[log in to unmask]>:
> Hi Alessandro,
>
> That line, containing "tmp_${RNDSTR}_${cstr}" has been changed in the
> version that is now included in FSL, so it looks you were really using the
> previous version from the website. Nonetheless, a segmentation fault has to
> be a problem with the atlasquery (i.e. the binary backend), so my
> recommendation is really to update to 5.0.8 and, if the problem persists,
> please let us know.
>
> Thanks!
>
> All the best,
>
> Anderson
>
>
> On 11 December 2014 at 14:51, Alessandro Bellini <[log in to unmask]>
> wrote:
>
>> I try to use directly atlasquery and I have the following message
>>
>> analisi@analisi-hp-linux ~/Ale/TBSS/CIS/Proc/stats $ *atlasquery -a "JHU
>> White-Matter Tractography Atlas" -m tbss_tfce_corrp_tstat2.nii.gz *
>> Anterior thalamic radiation L:1.33074
>> Anterior thalamic radiation R:0.893303
>> Corticospinal tract L:0.778339
>> Corticospinal tract R:0.555696
>> Cingulum (cingulate gyrus) L:0.315727
>> Cingulum (cingulate gyrus) R:0.0544736
>> Cingulum (hippocampus) L:0.153622
>> Cingulum (hippocampus) R:0.163147
>> Forceps major:1.01173
>> Forceps minor:2.53899
>> Inferior fronto-occipital fasciculus L:1.66984
>> Inferior fronto-occipital fasciculus R:1.71571
>> Inferior longitudinal fasciculus L:1.41508
>> Inferior longitudinal fasciculus R:1.02592
>> Superior longitudinal fasciculus L:1.45333
>> Superior longitudinal fasciculus R:0.883632
>> Uncinate fasciculus L:0.592347
>> Uncinate fasciculus R:0.311303
>> Superior longitudinal fasciculus (temporal part) L:0.701945
>> Superior longitudinal fasciculus (temporal part) R:0.38773
>> *Segmentation fault*
>>
>>
>>
>>
>> 2014-12-11 9:58 GMT+01:00 Alessandro Bellini <[log in to unmask]>:
>>
>>> Hi
>>>
>>> I'm using FSL version 5.0.7.4 and I'm using the script that comes with
>>> it.
>>>
>>> Thanks
>>>
>>> Alessandro
>>>
>>> 2014-12-10 18:00 GMT+01:00 Anderson M. Winkler <[log in to unmask]>:
>>>
>>> Hi Alessandro,
>>>>
>>>> The autoaq has been integrated into FSL. Please, make sure that you are
>>>> using the latest FSL (5.0.8) and that you are invoking the script that
>>>> comes with it, that is, ${FSLDIR}/bin/autoaq. This version supersedes the
>>>> previous version of autoaq that was available at brainder.org.
>>>>
>>>> All the best,
>>>>
>>>> Anderson
>>>>
>>>>
>>>> On 10 December 2014 at 16:17, Alessandro Bellini <[log in to unmask]>
>>>> wrote:
>>>>
>>>>> Hi all,
>>>>> I'm trying to use autoaq for the first time on my TBSS data. I have an
>>>>> error while using autoaq.
>>>>>
>>>>> autoaq -i tbss_tfce_corrp_tstat2.nii.gz -t 0.95 -o report.txt -a "JHU
>>>>> White-Matter Tractography Atlas"
>>>>>
>>>>> /usr/lib/fsl/5.0/autoaq: riga 151: 6386 Segmentation fault
>>>>> ${FSLDIR}/bin/atlasquery -a "${ATLAS}" -m tmp_${RNDSTR}_${cstr} >> ${OUT}
>>>>>
>>>>> I've downloaded the last autoaq script from the web.
>>>>>
>>>>> Thanks
>>>>>
>>>>
>>>>
>>>
>>
>
