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ouch ! > -----Original Message----- > From: [log in to unmask] > Sent: Thu, 11 Dec 2014 13:58:14 +0000 > To: [log in to unmask] > Subject: Re: [ccp4bb] Ramachandran maps > > I thought Procheck was pre-war, and we should all be using Molprobity > these day? > > > Andreas > > > > On 11/12/2014 9:19, Evgeny Osipov wrote: >> Dear Patrick, >> Try to use procheck from ccp4: >> Correct usage is: >> >> procheck filename [chain] resolution >> >> >> where filename = the coordinates file in Brookhaven format >> [chain] = an optional one-letter chain-ID >> resolution = a real number giving the resolution >> of the structure >> >> For example:- >> >> procheck /data/pdb/p1amt.pdb A 1.5 >> >> It also generates a few other useful charts for your structure >> >> On 09.12.2014 18:47, PC wrote: >>> Hi guys, >>> >>> Sorry for the repost in COOT/CCP4/PHENIX. >>> It is possible on of the users in one of these communities might know >>> the answer >>> >>> I was wondering if there is a small script I can use to generate the >>> outline of the allowed regions of Ramachandran map on to which I can >>> superimpose my coordinates phi and psi? >>> >>> Something like what appears in COOT->Validate->Ramachandran Plot. >>> >>> How does one generate such images for publications? >>> >>> Thank you, >>> Patrick >>> >>> ____________________________________________________________ >>> FREE 3D EARTH SCREENSAVER - Watch the Earth right on your desktop! >>> Check it out at http://www.inbox.com/earth >> >> > > -- > Andreas Förster > X-ray Crystallography Facility Manager > Centre for Structural Biology > Imperial College London ____________________________________________________________ FREE 3D EARTH SCREENSAVER - Watch the Earth right on your desktop! Check it out at http://www.inbox.com/earth