I thought Procheck was pre-war, and we should all be using Molprobity
these day?
Andreas
On 11/12/2014 9:19, Evgeny Osipov wrote:
> Dear Patrick,
> Try to use procheck from ccp4:
> Correct usage is:
>
> procheck filename [chain] resolution
>
>
> where filename = the coordinates file in Brookhaven format
> [chain] = an optional one-letter chain-ID
> resolution = a real number giving the resolution
> of the structure
>
> For example:-
>
> procheck /data/pdb/p1amt.pdb A 1.5
>
> It also generates a few other useful charts for your structure
>
> On 09.12.2014 18:47, PC wrote:
>> Hi guys,
>>
>> Sorry for the repost in COOT/CCP4/PHENIX.
>> It is possible on of the users in one of these communities might know
>> the answer
>>
>> I was wondering if there is a small script I can use to generate the
>> outline of the allowed regions of Ramachandran map on to which I can
>> superimpose my coordinates phi and psi?
>>
>> Something like what appears in COOT->Validate->Ramachandran Plot.
>>
>> How does one generate such images for publications?
>>
>> Thank you,
>> Patrick
>>
>> ____________________________________________________________
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>
>
--
Andreas Förster
X-ray Crystallography Facility Manager
Centre for Structural Biology
Imperial College London
