On 2 Nov 2014, at 05:07, elahe' yargholi <[log in to unmask]> wrote:

Dear FSL experts,

I usually use mricron to convert dicom images to 4D nii, but this time my 4D data has 1142 volumes and mricron did not work so used mri_convert or unpacksdcm from freesurfer. They produced the 4D data, but the anterior-posterior is (left to right) in opposite direction of previous 4D data or MNI atlas and the fsl registration is incorrect. what is the safest way to correct that?

I do appreciate your attention.

BR,
Elahe

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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre

FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve

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