Hi Matthew,
I have checked and it seems like there is something called "midnight commander" associated with mc. I've now contacted our support team to see whether I can unset this.
Is there a straightfoward way to check whether motion correction has worked?
It seems that I do get the correct MCFLIRT estimations in prestats and in the mc folders for my .feat outputs I have .rms, .par, .mat and .png files. Do you know whether there anything else that I should have?
Sorry for my confusion- I am very grateful for your help.
Leah
________________________________________
From: FSL - FMRIB's Software Library <[log in to unmask]> on behalf of Matthew Webster <[log in to unmask]>
Sent: 21 November 2014 11:56
To: [log in to unmask]
Subject: Re: [FSL] Feat error message
Hello,
Do you have an alias set up for "mc" in your shell enviroment? If so does unsetting it fix the error message?
Kind Regards
Matthew
> Hi All,
>
> I get exactly the same error in all of my analyses that I have run in FEAT v5.98.
>
> All .fsf files have been created in this version.
> Any idea of why this might be would be gratefully recieved.
>
> Many thanks
> Leah
>
>
>
> ________________________________________
> From: FSL - FMRIB's Software Library <[log in to unmask]> on behalf of Mark Jenkinson <[log in to unmask]>
> Sent: 19 November 2014 20:24
> To: [log in to unmask]
> Subject: Re: [FSL] Feat error message
>
> Hi,
>
> Quite a few things have changed in FSL since 2008, so the .fsf files are unlikely to work directly.
> It might be helpful to load the design.fsf file, take note of the settings, and then setup a fresh GUI with these settings and see if that helps. I’m not really sure what this mc error is referring to, but it is in line 1, which seems very odd.
>
> All the best,
> Mark
>
>
>
>
>
>
>> On 19 Nov 2014, at 15:16, Elanor Hinton <[log in to unmask]> wrote:
>>
>> Hi all,
>>
>> I am trying to reanalyse some data that was originally collected and analysed in 2008.
>>
>> I keep getting the following error when I run the same analysis as before (having loaded the design.fsf into feat):
>> /bin/sh: mc: line 1: syntax error: unexpected end of file
>> /bin/sh: error importing function definition for `mc'
>>
>> I thought mc might refer to motion correction but wasn't sure why that would be affected.
>>
>> I would be very grateful if anyone has a clue why I am getting this error (particularly as I am working to return reviewers comments by next week!)
>>
>> With many thanks in advance
>> Ella
>
