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Hi Dorothy,
this dashed lines represent links. You can delete them in PDB-file, look for keywords LINK and LINKER. In coot you can create them via tool in menu.
However its creation after Real Space Refinemnet or Regularize zone looks to me as a bug.

Jan

On 11/04/2014 01:16 PM, ly wrote:
[log in to unmask]" type="cite">
Dear Eleanor,
Thank  you for your advice.
I have tried it, but it didn't work.
 Also the dash line shown by the function in environmental distance is different from the lines in my display.
 
Dorothy





At 2014-11-04 17:50:40, "Eleanor Dodson" <[log in to unmask]> wrote:
Check under Measures - are you showing environmental distances, or did you ask for a distance to be displayed - there is an option there - clear all distances.
Eleanor

On 4 November 2014 04:55, ly <[log in to unmask]> wrote:
Hi,
I just encountered a problem during handling the residue fit: after using the program "real space refine zone " and "regularize zone", the residue cys 434 and his 435 have fit the map, but two dash lines were formed between the Carbonyl O and C in cys 434 and Carbonyl O in his 435, I change the position and orientation
of the residue, even mutate the residue, delete it and create it again. However, the two dash lines still can't be removed.The picture show this problem in the picture in attachment.
I hope anyone to give me some advice and suggestion to solve the problem, I would
appreciate hearing them.
Thank you!,
Dorothy






-- 
Jan Stransky, PhD student
Institute of Biotechnology, AS CR
Laboratory of structure and function of biomolecules
Nad Safinou II 366
Vestec
Czech Republic

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