Hello,
It is possible that some of your input FEAT directories are missing design.lcon files, if you remove all design.lcon files from all the input directories then the relevant values will be regenerated when the 3rd level is run.
Kind Regards
Matthew
> Dear FSLers,
>
> I am running into an error in a 3rd level FEAT analysis but cannot seem to track down the issue. The analysis has 320 cope images (20 subs * 16 EVs), and is just averaging them into 16 EVs. Could you please help me understand the following log errors?
>
> Thank you
>
> Roman
>
> *--------------------------------------------------------------------------------------------------------------*
> In the *.gfeat log:
> *--------------------------------------------------------------------------------------------------------------*
> /space/raid/fmri/fsl-5.0.7-centos6_64/bin/fslmaths mean_func -Tmean mean_func
> syntax error in expression "1 + zstat1": variable references require preceding $
> while executing
> "if { [ catch {
>
> for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
> switch -- [ lindex $argv $argindex ] {
>
> -I {
> incr arginde..."
> (file "/space/raid/fmri/fsl-5.0.7-centos6_64/bin/feat" line 310)
> -gfeatprep
> syntax error in expression "1 + zstat1": variable references require preceding $
> *--------------------------------------------------------------------------------------------------------------*
>
>
> *--------------------------------------------------------------------------------------------------------------*
> In the "Higher level" (i.e., *.gfeat/cope1.feat) log:
> *--------------------------------------------------------------------------------------------------------------*
>
> Higher-level stats
>
>
> cat ../design.lcon | awk '{ print }' > design.lcon
> cat: ../design.lcon: No such file or directory
>
> FATAL ERROR ENCOUNTERED
> cat: ../design.lcon: No such file or directory
> while executing
> "if { [ catch {
>
> for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
> switch -- [ lindex $argv $argindex ] {
>
> -I {
> incr arginde..."
> (file "/space/raid/fmri/fsl-5.0.7-centos6_64/bin/feat" line 310)
> -flame1
> cat: ../design.lcon: No such file or directory
> /bin/sh: dummy: command not found
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>
> /bin/rm -f stats/zem* stats/zols* stats/mask* ; /bin/mv dof stats
> /bin/mv: cannot stat â\u20ac\u02dcdofâ\u20ac\u2122: No such file or directory
>
> FATAL ERROR ENCOUNTERED
> /bin/mv: cannot stat â\u20ac\u02dcdofâ\u20ac\u2122: No such file or directory
> while executing
> "if { [ catch {
>
> for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
> switch -- [ lindex $argv $argindex ] {
>
> -I {
> incr arginde..."
> (file "/space/raid/fmri/fsl-5.0.7-centos6_64/bin/feat" line 310)
> -flame3
> /bin/mv: cannot stat â\u20ac\u02dcdofâ\u20ac\u2122: No such file or directory
> *--------------------------------------------------------------------------------------------------------------*
>
>
