Hi - okay, so you definitely have other image files being created. It would help to be able to look at the full report.html file.

You can create a zip of it as such:

zip report.zip report.html *png A_and_B.gif

The resulting zip will be too big to post to the list but feel free to send it to my email address directly (or make it available on the web and send a link out).

On Wed, Oct 8, 2014 at 3:29 PM, Xavier Aymerich <[log in to unmask]> wrote:
Hi Niels,

I am sending you fslinfo (is the same for both input files) and ls -lh outputs in attached files.

The ammount of RAM is 2.9GB in a virtual machine. It is the same RAM that I have in other systems where earlier versions of FSL are running without problems.

data_type      INT16
dim1           144
dim2           224
dim3           126
dim4           1
datatype       4
pixdim1        1.199995
pixdim2        1.000000
pixdim3        1.000000
pixdim4        1.000000
cal_max        0.0000
cal_min        0.0000
file_type      NIFTI-1+



total 48M
-rwxrwxrwx. 1 root root 286K Oct  6 16:32 A_and_B.gif
-rwxrwxrwx. 1 root root 121K Oct  6 16:31 A_bet.png
-rwxrwxrwx. 1 root root 327K Oct  6 16:43 A_halfwayto_B_brain_mixeltype.nii.gz
-rwxrwxrwx. 1 root root 697K Oct  6 16:43 A_halfwayto_B_brain_pve_0.nii.gz
-rwxrwxrwx. 1 root root 1.1M Oct  6 16:43 A_halfwayto_B_brain_pve_1.nii.gz
-rwxrwxrwx. 1 root root 560K Oct  6 16:43 A_halfwayto_B_brain_pve_2.nii.gz
-rwxrwxrwx. 1 root root 285K Oct  6 16:43 A_halfwayto_B_brain_pveseg.nii.gz
-rwxrwxrwx. 1 root root 143K Oct  6 16:43 A_halfwayto_B_brain_seg.png
-rwxrwxrwx. 1 root root  153 Oct  6 16:32 A_halfwayto_B.mat
-rwxrwxrwx. 1 root root 6.4M Oct  6 16:43 A_halfwayto_B_render.nii.gz
-rwxrwxrwx. 1 root root 373K Oct  6 16:43 A_halfwayto_B_render.png
-rwxrwxrwx. 1 root root 329K Oct  6 16:35 A_halfwayto_scA_brain_mixeltype.nii.gz
-rwxrwxrwx. 1 root root 2.2M Oct  6 16:32 A_halfwayto_scA_brain.nii.gz
-rwxrwxrwx. 1 root root 701K Oct  6 16:35 A_halfwayto_scA_brain_pve_0.nii.gz
-rwxrwxrwx. 1 root root 1.2M Oct  6 16:35 A_halfwayto_scA_brain_pve_1.nii.gz
-rwxrwxrwx. 1 root root 564K Oct  6 16:35 A_halfwayto_scA_brain_pve_2.nii.gz
-rwxrwxrwx. 1 root root 289K Oct  6 16:35 A_halfwayto_scA_brain_pveseg.nii.gz
-rwxrwxrwx. 1 root root 5.4M Oct  6 16:32 A_halfwayto_scA.nii.gz
-rwxrwxrwx. 1 root root 4.7M Oct  6 16:31 A.nii.gz
-rwxrwxrwx. 1 root root 218K Oct  6 16:43 A_to_B_edgepoints.nii.gz
-rwxrwxrwx. 1 root root 880K Oct  6 16:43 A_to_B_flow.nii.gz
-rwxrwxrwx. 1 root root  188 Oct  6 16:32 A_to_B.mat
-rwxrwxrwx. 1 root root 224K Oct  6 16:35 A_to_scA_edgepoints.nii.gz
-rwxrwxrwx. 1 root root 904K Oct  6 16:35 A_to_scA_flow.nii.gz
-rwxrwxrwx. 1 root root 185K Oct  6 16:32 A_valid_mask_with_B.png
-rwxrwxrwx. 1 root root 120K Oct  6 16:31 B_bet.png
-rwxrwxrwx. 1 root root 324K Oct  6 16:40 B_halfwayto_A_brain_mixeltype.nii.gz
-rwxrwxrwx. 1 root root 683K Oct  6 16:40 B_halfwayto_A_brain_pve_0.nii.gz
-rwxrwxrwx. 1 root root 1.1M Oct  6 16:40 B_halfwayto_A_brain_pve_1.nii.gz
-rwxrwxrwx. 1 root root 548K Oct  6 16:40 B_halfwayto_A_brain_pve_2.nii.gz
-rwxrwxrwx. 1 root root 280K Oct  6 16:40 B_halfwayto_A_brain_pveseg.nii.gz
-rwxrwxrwx. 1 root root 144K Oct  6 16:40 B_halfwayto_A_brain_seg.png
-rwxrwxrwx. 1 root root  152 Oct  6 16:32 B_halfwayto_A.mat
-rwxrwxrwx. 1 root root 326K Oct  6 16:37 B_halfwayto_scB_brain_mixeltype.nii.gz
-rwxrwxrwx. 1 root root 2.2M Oct  6 16:35 B_halfwayto_scB_brain.nii.gz
-rwxrwxrwx. 1 root root 690K Oct  6 16:37 B_halfwayto_scB_brain_pve_0.nii.gz
-rwxrwxrwx. 1 root root 1.1M Oct  6 16:37 B_halfwayto_scB_brain_pve_1.nii.gz
-rwxrwxrwx. 1 root root 554K Oct  6 16:37 B_halfwayto_scB_brain_pve_2.nii.gz
-rwxrwxrwx. 1 root root 286K Oct  6 16:37 B_halfwayto_scB_brain_pveseg.nii.gz
-rwxrwxrwx. 1 root root 5.4M Oct  6 16:35 B_halfwayto_scB.nii.gz
-rwxrwxrwx. 1 root root 4.7M Oct  6 16:31 B.nii.gz
-rwxrwxrwx. 1 root root 214K Oct  6 16:40 B_to_A_edgepoints.nii.gz
-rwxrwxrwx. 1 root root 869K Oct  6 16:40 B_to_A_flow.nii.gz
-rwxrwxrwx. 1 root root  189 Oct  6 16:32 B_to_A.mat
-rwxrwxrwx. 1 root root 221K Oct  6 16:37 B_to_scB_edgepoints.nii.gz
-rwxrwxrwx. 1 root root 894K Oct  6 16:37 B_to_scB_flow.nii.gz
-rwxrwxrwx. 1 root root 190K Oct  6 16:32 B_valid_mask_with_A.png
-rwxrwxrwx. 1 root root    0 Oct  8 13:51 ls-lh.txt
-rwxrwxrwx. 1 root root 4.5K Oct  6 16:43 report.html
-rwxrwxrwx. 1 root root 2.7K Oct  6 16:43 report.siena






--
Niels Bergsland
Integration Director
Buffalo Neuroimaging Analysis Center
100 High St. Buffalo NY 14203
[log in to unmask]