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Hi Wen:

The wait state (eqw/hqw) in the Sun Grid Engine may be deceptive. You may need to check the graphic to see if there is any movement in your processing. I have found the wait state hang in the same condition for 24 hours. If you sense there is no movement, just delete it and resend the command. You can also tweak the 'priority' for faster results.

best,

Alan Francis


On Fri, Oct 3, 2014 at 4:21 PM, Leslie Cao <[log in to unmask]> wrote:
Thank you Andreas, I realised that it's not a problem, hqw is different from eqw,it's just pending, I should delete the latter instead.
Wen

On Fri, Oct 3, 2014 at 12:48 PM, Andreas Bartsch <[log in to unmask]> wrote:
Hi,

>but more hqw that I have to delete those

no – don't delete those. They start once the previous have complete and need to run to complete the analysis.
Cheers,
Andreas

Von: Leslie Cao <[log in to unmask]>
Antworten an: FSL - FMRIB's Software Library <[log in to unmask]>
Datum: Freitag, 3. Oktober 2014 17:45
An: <[log in to unmask]>
Betreff: [FSL] Qsub jobs problem

Dear FSL experts,
I have a problem about submitting feat design.fsf and when I check qstat, I usually gets some jogs running but more hqw that I have to delete those. The results for the first level and higher-level analysis seems fine, but I don't know whether this might be an issue caused by the settings, since I'm not using registration option in FSL and most of the preprocessing is done by another pipeline. Here're the example:

132830 0.50500 feat2_pre  wcao         r     10/03/2014 11:02:51 [log in to unmask]            1        

 132866 0.50500 feat2_pre  wcao         r     10/03/2014 11:06:45 [log in to unmask]           1        

 132836 0.00000 feat3a_fla wcao         hqw   10/03/2014 11:03:20                                    1        

 132837 0.00000 feat3b_fla wcao         hqw   10/03/2014 11:03:21                                    1 1

 132838 0.00000 feat3c_fla wcao         hqw   10/03/2014 11:03:23                                    1        

 132839 0.00000 feat4_post wcao         hqw   10/03/2014 11:03:24                                    1        

 132840 0.00000 feat5_stop wcao         hqw   10/03/2014 11:03:25                                    1    


Thanks,

Wen