Since there is a hinge, you could try searching with the two domains separately. On 10/05/14 03:34, Luzuokun wrote: > Dear all, > I’m doing molecular replacement using Phaser. My protein is predicted > to have two domain with a “hinge” linking them. The model sequence > identity is 0.27. But the MR result is poor. I’ve tried other > programme (Molrep, MrBump, Balbes,,,_.) But no improvement was > observed. I think that this is due to the “open” or “closed” > conformation around the hinge. I was told that I could place the Z > axis along the hinge > (http://xray0.princeton.edu/~phil/Facility/Guides/MolecularReplacement.html > <http://xray0.princeton.edu/%7Ephil/Facility/Guides/MolecularReplacement.html>), > could anyone tell me more details about how to do next? > > Thanks! > Lu Zuokun -- ======================================================================= All Things Serve the Beam ======================================================================= David J. Schuller modern man in a post-modern world MacCHESS, Cornell University [log in to unmask]