Dear Mark,

Thank you for your response. The template_4D_GM.nii.gz file looked good, and it contained all 64 volumes from my template_list file.

Are there other files I should check to explain this error for step 3?

Thank you for your consideration.

Best wishes,

Salil

Date:    Wed, 17 Sep 2014 18:02:44 +0000
From:    Mark Jenkinson <[log in to unmask]>
Subject: Re: fslvbm data mask is blank error for step 3

Hi,

Have you checked that the outputs of steps 1 and 2 are correct?
It sounds like the problem with the mask is likely to be a symptom of a problem earlier on.

All the best,
Mark

On 15 Sep 2014, at 08:07, Salil Soman <[log in to unmask]<mailto:[log in to unmask]>> wrote:


Dear List Members,

I have processed using data using steps 1 and 2 of fslvbm. When I run step 3,  3A seems to complete properly, however 3 outputs an error file into the stats directory stating that there was an error because the fslvbm data mask is blank. If anyone could provide guidance on what is going wrong and how to fix it, it would be greatly appreciated.

Best wishes,

Salil Soman, MD, MS