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*News from the Human Connectome Project (HCP)*

*September 10, 2014*

*HCP Processing Pipelines Released *


​The WU-Minn HCP Consortium is pleased to announce the open source release
of HCP data processing pipelines at
https://github.com/Washington-University/Pipelines. To download, click
*releases* (near the top of the page), then under v3.4.0, click the “Source
code (zip)” or “Source code (tar.gz)” button.

These v3 pipelines were used to process HCP image data from the HCP 500
Subjects Release (June 2014).



The HCP Pipelines are set of tools (primarily, but not exclusively, shell
scripts) for processing MRI images for the Human Connectome Project
<http://www.humanconnectome.org>. Among other things, these tools implement
the Minimal Preprocessing Pipeline (MPP) described in Glasser et al. 2013
<http://www.ncbi.nlm.nih.gov/pubmed/23668970>.



We are releasing the HCP Pipelines now for use to the community, but we are
still in the process of making the scripts more robust, well-documented,
and usable in other environments (other versions of operating systems,
other queueing systems, other versions of prerequisite tools, etc.). We
cannot guarantee that you will not have to make modifications to the
scripts for them to be used successfully in your environment.



The HCP Pipelines require installation of FSL 5.0.6, FreeSurfer v5.3.0-HCP,
and Connectome Workbench v1.0. See the README.md
<https://github.com/Washington-University/Pipelines/blob/master/README.md>
in the GitHub repository for detailed information on prerequisite software
versions, installation and processing instructions, example data, and
processing resource requirements.  Answers to frequently asked questions
can also be found on our Github Repository: HCP Pipeline FAQ
<https://github.com/Washington-University/Pipelines/blob/master/FAQ.md>.



We encourage user feedback and improvement suggestions on the HCP Pipeline
tools and the documentation.  Discussion of HCP Pipeline usage and
improvements can be posted to the hcp-users discussion list. Sign up for
hcp-users at http://humanconnectome.org/contact/#subscribe



Best,

The WU-Minn HCP Consortium





Jennifer Elam, Ph.D.
Outreach Coordinator, Human Connectome Project
Washington University School of Medicine
Department of Anatomy and Neurobiology, Box 8108
660 South Euclid Avenue
St. Louis, MO 63110
314-362-9387
[log in to unmask]
www.humanconnectome.org