I ran FIX classification using the Standard.RData and a single subject's .feat directory (which has all the requisite files/directories in it as I ran all pre-processing through FEAT GUI). I selected the matlab compilation as my means of running FIX. There are no error logs and it looks like everything ran "properly," so to speak.
However, I'm not seeing the classification output I'm expecting, i.e. the fix4melview_TRAIN_thr.txt file.
[beachpau@gauss SUBJECTS]$ fix -c HS_001/RestState_1_FSL_LAS.feat /home/beachpau/.local/opt/fix1.061/training_files/Standard.RData 20
FIX Classifying components in Melodic directory: HS_001/RestState_1_FSL_LAS.feat using training file: /home/beachpau/.local/opt/fix1.061/training_files/Standard.RData and threshold 20
FIX features not already generated, so creating them now.
FIX Feature extraction for Melodic output directory: HS_001/RestState_1_FSL_LAS.feat
create edge masks
run FAST
registration of standard space masks
extract features
[beachpau@gauss SUBJECTS]$
Looking in the resultant fix directory within the subject's .feat directory I seen the following output files:
edge1.nii.gz features.mat std1mm2exfunc0.nii.gz
edge2.nii.gz highres2std.mat std1mm2exfunc1dil2.nii.gz
edge3.nii.gz hr2exf.nii.gz std1mm2exfunc1dil.nii.gz
edge4.nii.gz hr2exfTMP.nii.gz std1mm2exfunc1.nii.gz
edge5.nii.gz hr2exfTMP.txt std1mm2exfunc2dil2.nii.gz
fastsg_mixeltype.nii.gz logMatlab.txt std1mm2exfunc2dil.nii.gz
fastsg_pve_0.nii.gz maske1.nii.gz std1mm2exfunc2.nii.gz
fastsg_pve_1.nii.gz maske2.nii.gz std1mm2exfunc3dil2.nii.gz
fastsg_pve_2.nii.gz maske3.nii.gz std1mm2exfunc3dil.nii.gz
fastsg_pveseg.nii.gz maske4.nii.gz std1mm2exfunc3.nii.gz
fastsg_seg.nii.gz maske5.nii.gz std2exfunc.mat
features.csv std1mm2exfunc0dil2.nii.gz std2highres.mat
features_info.csv std1mm2exfunc0dil.nii.gz
The only thing I could find with any kind of error was within the logMatlab.txt file. However, I'm not really sure why these errors would matter as I should be using the compiler setup for FIX.
The error on the logMatlab.txt file is as follows:
{Warning: Name is nonexistent or not a directory: /usr/local/fsl/etc/matlab.}
{> In path at 110
In startup at 1}
{Warning: Name is nonexistent or not a directory: /usr/local/fmrib/fmt.}
{> In path at 110
In startup at 2}
I've attached the full output file in case it helps.
Thanks!
