You're using mrinfo incorrectly.
in order to get the gradient information you need to use it with the dicoms not the nifti output from mrconvert.
> mrinfo /dir/to/diffusion/dicoms/ -grad /output.txt
This will give you the phase encoding info in a text file
No, I have not used it before, thank you for information.I can not use it with -grad option. Without -grad option mrinfo's output is;erdem@erdem-virtual-machine:~/Documents/mrtrix-read-only$ mrconvert /home/erdem/Desktop/Test/DICOM/12032816 ./out_img.nii.gzmrconvert: scanning DICOM set "/home/erdem/Desktop/Test/DICOM/12032816" - okSelect series ('q' to abort):0 - 176 MR images 16:21:28 t1_mpr_sag_iso (*tfl3d1_ns) [2]1 - 62 MR images 16:23:13 ep2d_diff_mddw_30_p2 (*ep_b1000#5) [3]2 - 45 MR images 16:29:31 ep2d_diff_mddw_30_p2_ADC (*ep_b0_1000) [4]3 - 45 MR images 16:29:31 ep2d_diff_mddw_30_p2_TRACEW (*ep_b1000t) [5]4 - 45 MR images 16:29:31 ep2d_diff_mddw_30_p2_FA (*ep_b0_1000) [6]5 - 45 MR images 16:29:32 ep2d_diff_mddw_30_p2_ColFA (?) [7]6 - 72 MR images 16:30:41 gre_field_mapping (*fm2d2r) [9]7 - 36 MR images 16:30:41 gre_field_mapping (*fm2d2r) [10]8 - 113 MR images 16:32:40 ep2d_pace_dynt_moco 103 (*epfid2d1_64) [11]9 - 113 MR images 16:32:40 act_MoCoSeries (*epfid2d1_64) [12]10 - 1 MR images 16:37:32 Design (*epfid2d1_64) [13]11 - 1 MR images 16:37:32 EvaSeries_GLM (*epfid2d1_64) [14]12 - 3 MR images 16:37:32 Mean_&_t-Maps (*epfid2d1_64) [15]13 - 179 MR images 16:39:53 ep2d_tra_pasl_p2 140 (*epfid2d1_64) [16]14 - 179 MR images 16:39:53 MoCoSeries (*epfid2d1_64) [17]15 - 1 MR images 16:46:17 Perfusion_Weighted (*epfid2d1_64) [18]16 - 1 MR images 16:46:17 relCBF (*epfid2d1_64) [19]? 1mrconvert: reading DICOM series "ep2d_diff_mddw_30_p2"... 100%mrconvert: DICOM image contains multiple frames - reformating... 100%mrconvert: copying data... 100%erdem@erdem-virtual-machine:~/Documents/mrtrix-read-only$ mrinfo -grad out_img.nii.gzmrinfo: expected at least 1 arguments (0 supplied)erdem@erdem-virtual-machine:~/Documents/mrtrix-read-only$ mrinfo -grad ./out_img.nii.gzmrinfo: expected at least 1 arguments (0 supplied)erdem@erdem-virtual-machine:~/Documents/mrtrix-read-only$ mrinfo ./out_img.nii.gz************************************************Image: "./out_img.nii.gz"************************************************Format: NIfTI-1.1Dimensions: 128 x 128 x 45 x 62Voxel size: 2 x 2 x 2 x ?Dimension labels: 0. left->right (mm)1. posterior->anterior (mm)2. inferior->superior (mm)3. undefined (?)Data type: unsigned 16 bit integer (little endian)Data layout: [ +0 +1 +2 +3 ]Data scaling: offset = 0, multiplier = 1Comments: Kirkar Ali Emir (2study: EGE BEYIN; DOB: 04/02/2003; DOS: 28/03/2012 16:23:13Transform: 0.9975 6.938e-08 -0.07125 -126.6-0.002623 0.9993 -0.03672 -142.70.0712 0.03681 0.9968 -41.470 0 0 1erdem@erdem-virtual-machine:~/Documents/mrtrix-read-only$So how should I progress?